Literature DB >> 24649856

Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus.

Fengbin Wang1, Shanteri Singh, Jianjun Zhang, Tyler D Huber, Kate E Helmich, Manjula Sunkara, Katherine A Hurley, Randal D Goff, Craig A Bingman, Andrew J Morris, Jon S Thorson, George N Phillips.   

Abstract

UNLABELLED: Methionine adenosyltransferase (MAT) is a family of enzymes that utilizes ATP and methionine to produce S-adenosylmethionine (AdoMet), the most crucial methyl donor in the biological methylation of biomolecules and bioactive natural products. Here, we report that the MAT from Sulfolobus solfataricus (sMAT), an enzyme from a poorly explored class of the MAT family, has the ability to produce a range of differentially alkylated AdoMet analogs in the presence of non-native methionine analogs and ATP. To investigate the molecular basis for AdoMet analog production, we have crystallized the sMAT in the AdoMet bound, S-adenosylethionine (AdoEth) bound and unbound forms. Notably, among these structures, the AdoEth bound form offers the first MAT structure containing a non-native product, and cumulatively these structures add new structural insight into the MAT family and allow for detailed active site comparison with its homologs in Escherichia coli and human. As a thermostable MAT structure from archaea, the structures herein also provide a basis for future engineering to potentially broaden AdoMet analog production as reagents for methyltransferase-catalyzed 'alkylrandomization' and/or the study of methylation in the context of biological processes. DATABASES: PDB IDs: 4HPV, 4L7I, 4K0B and 4L2Z. EC 2.5.1.6 STRUCTURED DIGITAL ABSTRACT: • sMAT and sMAT bind by x-ray crystallography (View interaction).
© 2014 FEBS.

Entities:  

Keywords:  S-adenosylmethionine; X-ray diffraction; enzyme engineering; methionine adenosyltransferase; natural product

Mesh:

Substances:

Year:  2014        PMID: 24649856      PMCID: PMC4169312          DOI: 10.1111/febs.12784

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  31 in total

1.  Conformational dynamics of the active site loop of S-adenosylmethionine synthetase illuminated by site-directed spin labeling.

Authors:  John C Taylor; George D Markham
Journal:  Arch Biochem Biophys       Date:  2003-07-15       Impact factor: 4.013

2.  The crystal structure of tetrameric methionine adenosyltransferase from rat liver reveals the methionine-binding site.

Authors:  B González; M A Pajares; J A Hermoso; L Alvarez; F Garrido; J R Sufrin; J Sanz-Aparicio
Journal:  J Mol Biol       Date:  2000-07-07       Impact factor: 5.469

3.  Identification of a highly diverged class of S-adenosylmethionine synthetases in the archaea.

Authors:  D E Graham; C L Bock; C Schalk-Hihi; Z J Lu; G D Markham
Journal:  J Biol Chem       Date:  2000-02-11       Impact factor: 5.157

4.  Insight into the polar reactivity of the onium chalcogen analogues of S-adenosyl-L-methionine.

Authors:  David F Iwig; Squire J Booker
Journal:  Biochemistry       Date:  2004-10-26       Impact factor: 3.162

5.  Chromatographic analysis of the chiral and covalent instability of S-adenosyl-L-methionine.

Authors:  J L Hoffman
Journal:  Biochemistry       Date:  1986-07-29       Impact factor: 3.162

6.  The active site loop of S-adenosylmethionine synthetase modulates catalytic efficiency.

Authors:  John C Taylor; Fusao Takusagawa; George D Markham
Journal:  Biochemistry       Date:  2002-07-30       Impact factor: 3.162

7.  Crystal structures of methionine adenosyltransferase complexed with substrates and products reveal the methionine-ATP recognition and give insights into the catalytic mechanism.

Authors:  Beatriz González; María A Pajares; Juan A Hermoso; Danielle Guillerm; Georges Guillerm; Julia Sanz-Aparicio
Journal:  J Mol Biol       Date:  2003-08-08       Impact factor: 5.469

8.  Crystal structure of S-adenosylmethionine synthetase.

Authors:  F Takusagawa; S Kamitori; S Misaki; G D Markham
Journal:  J Biol Chem       Date:  1996-01-05       Impact factor: 5.157

9.  S-adenosylmethionine synthetase in the thermophilic archaebacterium Sulfolobus solfataricus. Purification and characterization of two isoforms.

Authors:  M Porcelli; G Cacciapuoti; M Cartení-Farina; A Gambacorta
Journal:  Eur J Biochem       Date:  1988-11-01

10.  Crystal structure of the S-adenosylmethionine synthetase ternary complex: a novel catalytic mechanism of S-adenosylmethionine synthesis from ATP and Met.

Authors:  Junichi Komoto; Taro Yamada; Yoshimi Takata; George D Markham; Fusao Takusagawa
Journal:  Biochemistry       Date:  2004-02-24       Impact factor: 3.162

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  16 in total

1.  A thermostable archaeal S-adenosylmethionine synthetase: a promising tool to improve the synthesis of adenosylmethionine analogs of biotechnological interest.

Authors:  Marina Porcelli; Concetta Paola Ilisso; Laura Mosca; Giovanna Cacciapuoti
Journal:  Bioengineered       Date:  2015       Impact factor: 3.269

2.  Functional AdoMet Isosteres Resistant to Classical AdoMet Degradation Pathways.

Authors:  Tyler D Huber; Fengbin Wang; Shanteri Singh; Brooke R Johnson; Jianjun Zhang; Manjula Sunkara; Steven G Van Lanen; Andrew J Morris; George N Phillips; Jon S Thorson
Journal:  ACS Chem Biol       Date:  2016-07-14       Impact factor: 5.100

3.  Crystallography captures catalytic steps in human methionine adenosyltransferase enzymes.

Authors:  Ben Murray; Svetlana V Antonyuk; Alberto Marina; Shelly C Lu; Jose M Mato; S Samar Hasnain; Adriana L Rojas
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-08       Impact factor: 11.205

4.  Structure of a critical metabolic enzyme: S-adenosylmethionine synthetase from Cryptosporidium parvum.

Authors:  Jeffrey Ohren; Gwenn G Parungao; Ronald E Viola
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-04-02       Impact factor: 1.056

5.  Methionine Adenosyltransferase Engineering to Enable Bioorthogonal Platforms for AdoMet-Utilizing Enzymes.

Authors:  Tyler D Huber; Jonathan A Clinger; Yang Liu; Weijun Xu; Mitchell D Miller; George N Phillips; Jon S Thorson
Journal:  ACS Chem Biol       Date:  2020-03-03       Impact factor: 5.100

Review 6.  AdoMet analog synthesis and utilization: current state of the art.

Authors:  Tyler D Huber; Brooke R Johnson; Jianjun Zhang; Jon S Thorson
Journal:  Curr Opin Biotechnol       Date:  2016-08-06       Impact factor: 9.740

7.  Proteins analysed as virtual knots.

Authors:  Keith Alexander; Alexander J Taylor; Mark R Dennis
Journal:  Sci Rep       Date:  2017-02-13       Impact factor: 4.379

8.  Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases.

Authors:  Aileen Peters; Eric Herrmann; Nicolas V Cornelissen; Nils Klöcker; Daniel Kümmel; Andrea Rentmeister
Journal:  Chembiochem       Date:  2021-10-25       Impact factor: 3.461

9.  Loop dynamics of thymidine diphosphate-rhamnose 3'-O-methyltransferase (CalS11), an enzyme in calicheamicin biosynthesis.

Authors:  Lu Han; Shanteri Singh; Jon S Thorson; George N Phillips
Journal:  Struct Dyn       Date:  2016-02-18       Impact factor: 2.920

Review 10.  Post-Translational Modifications Aid Archaeal Survival.

Authors:  Ping Gong; Ping Lei; Shengping Wang; Ao Zeng; Huiqiang Lou
Journal:  Biomolecules       Date:  2020-04-10
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