Literature DB >> 24643516

Artificial trans-acting small interfering RNA: a tool for plant biology study and crop improvements.

Zhanyuan J Zhang1.   

Abstract

Completion of whole genome sequencing in many plant species including economically important crop species not only opens up new opportunities but also imposes challenges for plant science research community. Functional validation and utilization of these enormous DNA sequences necessitate new or improved tools with high accuracy and efficiency. Of various tools, small RNA-mediated gene silencing platform plays an important and unique role in functional verification of plant genes and trait improvements. Artificial trans-acting small interfering RNA (atasiRNA) has emerged as a potent and specific gene silencing platform which overcomes major limitations of other small RNA silencing approaches including double-stranded RNA, artificial microRNA (amiRNA), and microRNA-induced gene silencing. To best utilize atasiRNA platform, it is essential to be able to test candidate atasiRNAs efficiently through either in vivo or in vitro validation approach. Very recently, a breakthrough has been made in developing a new method for in vitro screen of amiRNA candidates, named "epitope-tagged protein-based amiRNA screens". Such a screen can be readily employed to validate atasiRNA candidates and thus accelerate the deployment of atasiRNA technology. Therefore, atasiRNA as an emerging tool shall accelerate both plant biology study and crop genetic improvements including trait stacking.

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Year:  2014        PMID: 24643516     DOI: 10.1007/s00425-014-2054-x

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  46 in total

Review 1.  Exploring plant genomes by RNA-induced gene silencing.

Authors:  Peter M Waterhouse; Christopher A Helliwell
Journal:  Nat Rev Genet       Date:  2003-01       Impact factor: 53.242

2.  HOMOLOGY-DEPENDENT GENE SILENCING IN PLANTS.

Authors:  P. Meyer; H. Saedler
Journal:  Annu Rev Plant Physiol Plant Mol Biol       Date:  1996-06

3.  MIGS: miRNA-induced gene silencing.

Authors:  Felipe Fenselau de Felippes; Jia-wei Wang; Detlef Weigel
Journal:  Plant J       Date:  2012-02-14       Impact factor: 6.417

4.  Small RNA duplexes function as mobile silencing signals between plant cells.

Authors:  Patrice Dunoyer; Gregory Schott; Christophe Himber; Denise Meyer; Atsushi Takeda; James C Carrington; Olivier Voinnet
Journal:  Science       Date:  2010-04-22       Impact factor: 47.728

Review 5.  The diversity of RNA silencing pathways in plants.

Authors:  Peter Brodersen; Olivier Voinnet
Journal:  Trends Genet       Date:  2006-03-29       Impact factor: 11.639

6.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

7.  Silencing the major apple allergen Mal d 1 by using the RNA interference approach.

Authors:  Luud J W J Gilissen; Suzanne T H P Bolhaar; Catarina I Matos; Gerard J A Rouwendal; Marjan J Boone; Frans A Krens; Laurian Zuidmeer; Astrid Van Leeuwen; Jaap Akkerdaas; Karin Hoffmann-Sommergruber; André C Knulst; Dirk Bosch; W Eric Van de Weg; Ronald Van Ree
Journal:  J Allergy Clin Immunol       Date:  2005-02       Impact factor: 10.793

8.  High-stearic and High-oleic cottonseed oils produced by hairpin RNA-mediated post-transcriptional gene silencing.

Authors:  Qing Liu; Surinder P Singh; Allan G Green
Journal:  Plant Physiol       Date:  2002-08       Impact factor: 8.340

9.  Silencing onion lachrymatory factor synthase causes a significant change in the sulfur secondary metabolite profile.

Authors:  Colin C Eady; Takahiro Kamoi; Masahiro Kato; Noel G Porter; Sheree Davis; Martin Shaw; Akiko Kamoi; Shinsuke Imai
Journal:  Plant Physiol       Date:  2008-06-26       Impact factor: 8.340

Review 10.  Genomics reveals new landscapes for crop improvement.

Authors:  Michael W Bevan; Cristobal Uauy
Journal:  Genome Biol       Date:  2013-06-24       Impact factor: 13.583

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  14 in total

1.  Host sunflower-induced silencing of parasitism-related genes confers resistance to invading Orobanche cumana.

Authors:  Zhengqiang Jiang; Qiqi Zhao; Runyao Bai; Ruonan Yu; Pengfei Diao; Ting Yan; Huimin Duan; Xuesong Ma; Zikai Zhou; Yanyan Fan; Hada Wuriyanghan
Journal:  Plant Physiol       Date:  2021-03-15       Impact factor: 8.340

2.  Fast-forward generation of effective artificial small RNAs for enhanced antiviral defense in plants.

Authors:  Alberto Carbonell; James C Carrington; José-Antonio Daròs
Journal:  RNA Dis       Date:  2016-01-12

3.  Novel constructs for efficient cloning of sRNA-encoding DNA and uniform silencing of plant genes employing artificial trans-acting small interfering RNA.

Authors:  Ulku Baykal; Hua Liu; Xinlu Chen; Henry T Nguyen; Zhanyuan J Zhang
Journal:  Plant Cell Rep       Date:  2016-07-14       Impact factor: 4.570

4.  Silencing of S100A4, a metastasis-associated protein, inhibits retinal neovascularization via the downregulation of BDNF in oxygen-induced ischaemic retinopathy.

Authors:  G Cheng; T He; Y Xing
Journal:  Eye (Lond)       Date:  2016-03-18       Impact factor: 3.775

5.  S100A4 gene silencing in oxygen-induced ischemic retinopathy inhibits retinal neovascularization via down-regulation of CREB expression.

Authors:  Gumeng Cheng; Kailin Tian; Lu Zhang; Ning Yang; Yiqiao Xing; Tao He
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2015-09-11       Impact factor: 3.117

6.  Engineering Artificial MicroRNAs for Multiplex Gene Silencing and Simplified Transgenic Screen.

Authors:  Nannan Zhang; Dandan Zhang; Samuel L Chen; Ben-Qiang Gong; Yanjun Guo; Lahong Xu; Xiao-Ning Zhang; Jian-Feng Li
Journal:  Plant Physiol       Date:  2018-10-05       Impact factor: 8.340

7.  Fine-Tuning Plant Gene Expression with Synthetic Trans-Acting Small Interfering RNAs.

Authors:  Lucio López-Dolz; Maria Spada; José-Antonio Daròs; Alberto Carbonell
Journal:  Methods Mol Biol       Date:  2022

Review 8.  Alternative Strategies for Multi-Stress Tolerance and Yield Improvement in Millets.

Authors:  Muhammad Numan; Desalegn D Serba; Ayalew Ligaba-Osena
Journal:  Genes (Basel)       Date:  2021-05-14       Impact factor: 4.096

9.  Investigation of a miRNA-Induced Gene Silencing Technique in Petunia Reveals Alterations in miR173 Precursor Processing and the Accumulation of Secondary siRNAs from Endogenous Genes.

Authors:  Yao Han; Bin Zhang; Xiaoting Qin; Mingyang Li; Yulong Guo
Journal:  PLoS One       Date:  2015-12-14       Impact factor: 3.240

10.  P-SAMS: a web site for plant artificial microRNA and synthetic trans-acting small interfering RNA design.

Authors:  Noah Fahlgren; Steven T Hill; James C Carrington; Alberto Carbonell
Journal:  Bioinformatics       Date:  2015-09-17       Impact factor: 6.937

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