Literature DB >> 26925463

Fast-forward generation of effective artificial small RNAs for enhanced antiviral defense in plants.

Alberto Carbonell1, James C Carrington2, José-Antonio Daròs1.   

Abstract

Artificial small RNAs (sRNAs) are short ≈21-nt non-coding RNAs engineered to inactivate sequence complementary RNAs. In plants, they have been extensively used to silence cellular transcripts in gene function analyses and to target invading RNA viruses to induce resistance. Current artificial sRNA-based antiviral resistance in plants is mainly limited to a single virus, and is jeopardized by the emergence of mutations in the artificial sRNA target site or by the presence of co-infecting viruses. Hence, there is a need to further develop the artificial sRNA approach to generate more broad and durable antiviral resistance in plants. A recently developed toolbox allows for the time and cost-effective large-scale production of artificial sRNA constructs in plants. The toolbox includes the P-SAMS web tool for the automated design of artificial sRNAs, and a new generation of artificial microRNA and synthetic trans-acting small interfering RNA (syn-tasiRNA) vectors for direct cloning and high expression of artificial sRNAs. Here we describe how the simplicity and high-throughput capability of these new technologies should accelerate the study of artificial sRNA-based antiviral resistance in plants. In particular, we discuss the potential of the syn-tasiRNA approach as a promising strategy for developing more effective, durable and broad antiviral resistance in plants.

Entities:  

Keywords:  artificial microRNA; plant virus; silencing; small RNA; synthetic trans-acting small interfering RNA; virus resistance

Year:  2016        PMID: 26925463      PMCID: PMC4768481     

Source DB:  PubMed          Journal:  RNA Dis        ISSN: 2375-2467


  20 in total

1.  Highly specific gene silencing by artificial microRNAs in Arabidopsis.

Authors:  Rebecca Schwab; Stephan Ossowski; Markus Riester; Norman Warthmann; Detlef Weigel
Journal:  Plant Cell       Date:  2006-03-10       Impact factor: 11.277

2.  Multiple artificial microRNAs targeting conserved motifs of the replicase gene confer robust transgenic resistance to negative-sense single-stranded RNA plant virus.

Authors:  Yi-Jung Kung; Shih-Shun Lin; Ya-Ling Huang; Tsung-Chi Chen; Sankara Subramanian Harish; Nam-Hai Chua; Shyi-Dong Yeh
Journal:  Mol Plant Pathol       Date:  2011-09-19       Impact factor: 5.663

3.  Polycistronic artificial miRNA-mediated resistance to Wheat dwarf virus in barley is highly efficient at low temperature.

Authors:  András Kis; Gergely Tholt; Milán Ivanics; Éva Várallyay; Barnabás Jenes; Zoltán Havelda
Journal:  Mol Plant Pathol       Date:  2015-07-30       Impact factor: 5.663

4.  Tempo and mode of plant RNA virus escape from RNA interference-mediated resistance.

Authors:  Guillaume Lafforgue; Fernando Martínez; Josep Sardanyés; Francisca de la Iglesia; Qi-Wen Niu; Shih-Shun Lin; Ricard V Solé; Nam-Hai Chua; José-Antonio Daròs; Santiago F Elena
Journal:  J Virol       Date:  2011-07-20       Impact factor: 5.103

5.  Resistance to Wheat streak mosaic virus generated by expression of an artificial polycistronic microRNA in wheat.

Authors:  Muhammad Fahim; Anthony A Millar; Craig C Wood; Philip J Larkin
Journal:  Plant Biotechnol J       Date:  2011-09-05       Impact factor: 9.803

6.  Fate of artificial microRNA-mediated resistance to plant viruses in mixed infections.

Authors:  Fernando Martínez; Santiago F Elena; José-Antonio Daròs
Journal:  Phytopathology       Date:  2013-08       Impact factor: 4.025

7.  Artificial trans-acting siRNAs confer consistent and effective gene silencing.

Authors:  Maria de la Luz Gutiérrez-Nava; Milo J Aukerman; Hajime Sakai; Scott V Tingey; Robert W Williams
Journal:  Plant Physiol       Date:  2008-04-25       Impact factor: 8.340

Review 8.  The expanding world of small RNAs in plants.

Authors:  Filipe Borges; Robert A Martienssen
Journal:  Nat Rev Mol Cell Biol       Date:  2015-11-04       Impact factor: 94.444

9.  New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis.

Authors:  Alberto Carbonell; Atsushi Takeda; Noah Fahlgren; Simon C Johnson; Josh T Cuperus; James C Carrington
Journal:  Plant Physiol       Date:  2014-03-19       Impact factor: 8.340

10.  Assorted Processing of Synthetic Trans-Acting siRNAs and Its Activity in Antiviral Resistance.

Authors:  Mingmin Zhao; David San León; Frida Mesel; Juan Antonio García; Carmen Simón-Mateo
Journal:  PLoS One       Date:  2015-07-06       Impact factor: 3.240

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  5 in total

1.  Artificial MicroRNA-Based Specific Gene Silencing of Grain Hardness Genes in Polyploid Cereals Appeared to Be Not Stable Over Transgenic Plant Generations.

Authors:  Sebastian Gasparis; Maciej Kała; Mateusz Przyborowski; Waclaw Orczyk; Anna Nadolska-Orczyk
Journal:  Front Plant Sci       Date:  2017-01-09       Impact factor: 5.753

2.  Multi-targeting of viral RNAs with synthetic trans-acting small interfering RNAs enhances plant antiviral resistance.

Authors:  Alberto Carbonell; Purificación Lisón; José-Antonio Daròs
Journal:  Plant J       Date:  2019-09-16       Impact factor: 6.417

3.  Silencing P25, HC-Pro and Brp1 of Potato Virus (Viroid) Using Artificial microRNA Confers Resistance to PVX, PVY and PSTVd in Transgenic Potato.

Authors:  Lili Jiang; Rui Mu; Ziquan Wang; Shangwu Liu; Dianqiu Lu
Journal:  Potato Res       Date:  2022-08-18       Impact factor: 2.561

4.  Targeting of genomic and negative-sense strands of viral RNA contributes to antiviral resistance mediated by artificial miRNAs and promotes the emergence of complex viral populations.

Authors:  Frida Mesel; Mingmin Zhao; Beatriz García; Carmen Simón-Mateo; Juan Antonio García
Journal:  Mol Plant Pathol       Date:  2022-08-21       Impact factor: 5.520

5.  Artificial microRNA guide strand selection from duplexes with no mismatches shows a purine-rich preference for virus- and non-virus-based expression vectors in plants.

Authors:  Yen-Wen Kuo; Bryce W Falk
Journal:  Plant Biotechnol J       Date:  2022-02-19       Impact factor: 13.263

  5 in total

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