Literature DB >> 24637837

Are genes switched on when they kiss?

Stephanie Fanucchi1, Youtaro Shibayama1, Musa M Mhlanga2.   

Abstract

Chromatin loops are pervasive and permit the tight compaction of DNA within the confined space of the nucleus. Looping enables distal genes and DNA elements to engage in chromosomal contact, to form multigene complexes. Advances in biochemical and imaging techniques reveal that loop-mediated contact is strongly correlated with transcription of interacting DNA. However, these approaches only provide a snapshot of events and therefore are unable to reveal the dynamics of multigene complex assembly. This highlights the necessity to develop single cell-based assays that provide single molecule resolution, and are able to functionally interrogate the role of chromosomal contact on gene regulation. To this end, high-resolution single cell imaging regimes, combined with genome editing approaches, are proving to be pivotal to advancing our understanding of loop-mediated dynamics.

Keywords:  CRISPR; RNA; RNA FISH; TALEN; chromosomal looping; genome editing; multigene complex; single molecule imaging; transcription

Mesh:

Substances:

Year:  2014        PMID: 24637837      PMCID: PMC4049915          DOI: 10.4161/nucl.28352

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  67 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-01       Impact factor: 11.205

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Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-06       Impact factor: 11.205

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Authors:  Shin-ichi Horike; Shutao Cai; Masaru Miyano; Jan-Fang Cheng; Terumi Kohwi-Shigematsu
Journal:  Nat Genet       Date:  2004-12-19       Impact factor: 38.330

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Journal:  J Cell Biol       Date:  1999-09-06       Impact factor: 10.539

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Journal:  J Cell Biol       Date:  1999-06-14       Impact factor: 10.539

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  2 in total

Review 1.  Promiscuous Gene Expression in the Thymus: A Matter of Epigenetics, miRNA, and More?

Authors:  Olga Ucar; Kristin Rattay
Journal:  Front Immunol       Date:  2015-03-03       Impact factor: 7.561

2.  Small chromosomal regions position themselves autonomously according to their chromatin class.

Authors:  Harmen J G van de Werken; Josien C Haan; Yana Feodorova; Dominika Bijos; An Weuts; Koen Theunis; Sjoerd J B Holwerda; Wouter Meuleman; Ludo Pagie; Katharina Thanisch; Parveen Kumar; Heinrich Leonhardt; Peter Marynen; Bas van Steensel; Thierry Voet; Wouter de Laat; Irina Solovei; Boris Joffe
Journal:  Genome Res       Date:  2017-03-24       Impact factor: 9.043

  2 in total

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