Literature DB >> 24637397

Dynamics of histone variant H3.3 and its coregulation with H2A.Z at enhancers and promoters.

Ping Chen1, Yan Wang2, Guohong Li1.   

Abstract

In eukaryotes, genomic DNA is hierarchically packaged into chromatin by histones. A defined organization of the genome into chromatin with specific patterns of epigenetic modifications is crucial for transcriptional regulation, cell fate determination, and maintenance, in which the histone variant incorporation has been characterized as one of the most key players. The diversity of histone variants results in structural plasticity of chromatin and highlights functionally distinct chromosomal domains. Here we focus on the role of histone variant H3.3 and its coregulation with H2A.Z in chromatin dynamics at enhancers and promoters and transcriptional regulation.

Entities:  

Keywords:  H2A.Z; H3.3; chromatin dynamics; histone variant; transcriptional regulation

Mesh:

Substances:

Year:  2014        PMID: 24637397      PMCID: PMC4028350          DOI: 10.4161/nucl.28067

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  58 in total

1.  Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription.

Authors:  Ray Kit Ng; J B Gurdon
Journal:  Nat Cell Biol       Date:  2007-12-09       Impact factor: 28.824

2.  Nucleosome stability mediated by histone variants H3.3 and H2A.Z.

Authors:  Chunyuan Jin; Gary Felsenfeld
Journal:  Genes Dev       Date:  2007-06-15       Impact factor: 11.361

3.  Dynamic histone variant exchange accompanies gene induction in T cells.

Authors:  Elissa L Sutcliffe; Ian A Parish; Yi Qing He; Torsten Juelich; M Louise Tierney; Danny Rangasamy; Peter J Milburn; Christopher R Parish; David J Tremethick; Sudha Rao
Journal:  Mol Cell Biol       Date:  2009-01-21       Impact factor: 4.272

4.  Four amino acids guide the assembly or disassembly of Arabidopsis histone H3.3-containing nucleosomes.

Authors:  Leilei Shi; Jing Wang; Fang Hong; David L Spector; Yuda Fang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

5.  Histone H1 binding is inhibited by histone variant H3.3.

Authors:  Ulrich Braunschweig; Greg J Hogan; Ludo Pagie; Bas van Steensel
Journal:  EMBO J       Date:  2009-10-15       Impact factor: 11.598

6.  Interaction of the glucocorticoid receptor with the chromatin landscape.

Authors:  Sam John; Peter J Sabo; Thomas A Johnson; Myong-Hee Sung; Simon C Biddie; Stafford L Lightman; Ty C Voss; Sean R Davis; Paul S Meltzer; John A Stamatoyannopoulos; Gordon L Hager
Journal:  Mol Cell       Date:  2008-03-14       Impact factor: 17.970

7.  Placing the HIRA histone chaperone complex in the chromatin landscape.

Authors:  Nikolay A Pchelintsev; Tony McBryan; Taranjit Singh Rai; John van Tuyn; Dominique Ray-Gallet; Geneviève Almouzni; Peter D Adams
Journal:  Cell Rep       Date:  2013-04-18       Impact factor: 9.423

8.  Histone H3.3 incorporation provides a unique and functionally essential telomeric chromatin in embryonic stem cells.

Authors:  Lee H Wong; Hua Ren; Evan Williams; James McGhie; Soyeon Ahn; Marcus Sim; Angela Tam; Elizabeth Earle; Melissa A Anderson; Jeffrey Mann; K H Andy Choo
Journal:  Genome Res       Date:  2009-02-05       Impact factor: 9.043

9.  Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning.

Authors:  Benoît Guillemette; Alain R Bataille; Nicolas Gévry; Maryse Adam; Mathieu Blanchette; François Robert; Luc Gaudreau
Journal:  PLoS Biol       Date:  2005-11-01       Impact factor: 8.029

10.  Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.

Authors:  Baohui Chen; Luke A Gilbert; Beth A Cimini; Joerg Schnitzbauer; Wei Zhang; Gene-Wei Li; Jason Park; Elizabeth H Blackburn; Jonathan S Weissman; Lei S Qi; Bo Huang
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

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  18 in total

1.  Comprehensive profiling reveals mechanisms of SOX2-mediated cell fate specification in human ESCs and NPCs.

Authors:  Chenlin Zhou; Xiaoqin Yang; Yiyang Sun; Hongyao Yu; Yong Zhang; Ying Jin
Journal:  Cell Res       Date:  2016-01-26       Impact factor: 25.617

Review 2.  Variants of core histones and their roles in cell fate decisions, development and cancer.

Authors:  Marcus Buschbeck; Sandra B Hake
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-01       Impact factor: 94.444

Review 3.  Epigenetic regulation of the histone-to-protamine transition during spermiogenesis.

Authors:  Jianqiang Bao; Mark T Bedford
Journal:  Reproduction       Date:  2016-02-05       Impact factor: 3.906

4.  HIRA complex presets transcriptional potential through coordinating depositions of the histone variants H3.3 and H2A.Z on the poised genes in mESCs.

Authors:  Yang Yang; Liwei Zhang; Chaoyang Xiong; Jun Chen; Li Wang; Zengqi Wen; Juan Yu; Ping Chen; Yanhui Xu; Jingji Jin; Yong Cai; Guohong Li
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

Review 5.  Enhancer reprogramming in tumor progression: a new route towards cancer cell plasticity.

Authors:  Luca Fagnocchi; Vittoria Poli; Alessio Zippo
Journal:  Cell Mol Life Sci       Date:  2018-04-24       Impact factor: 9.261

6.  EP400 Deposits H3.3 into Promoters and Enhancers during Gene Activation.

Authors:  Suman K Pradhan; Trent Su; Linda Yen; Karine Jacquet; Chengyang Huang; Jacques Côté; Siavash K Kurdistani; Michael F Carey
Journal:  Mol Cell       Date:  2015-12-06       Impact factor: 17.970

Review 7.  A Comprehensive Toolbox to Analyze Enhancer-Promoter Functions.

Authors:  Benedetto Daniele Giaimo; Tobias Friedrich; Tilman Borggrefe
Journal:  Methods Mol Biol       Date:  2021

Review 8.  Multi-layered epigenetic mechanisms contribute to transcriptional memory in T lymphocytes.

Authors:  Jennifer Dunn; Robert McCuaig; Wen Juan Tu; Kristine Hardy; Sudha Rao
Journal:  BMC Immunol       Date:  2015-05-06       Impact factor: 3.615

9.  E2F and STAT3 provide transcriptional synergy for histone variant H2AZ activation to sustain glioblastoma chromatin accessibility and tumorigenicity.

Authors:  Jeehyun Yoon; Oleg V Grinchuk; Roberto Tirado-Magallanes; Zhen Kai Ngian; Emmy Xue Yun Tay; You Heng Chuah; Bernice Woon Li Lee; Jia Feng; Karen Carmelina Crasta; Chin Tong Ong; Touati Benoukraf; Derrick Sek Tong Ong
Journal:  Cell Death Differ       Date:  2022-01-20       Impact factor: 12.067

Review 10.  Chromatin Dynamics in Vivo: A Game of Musical Chairs.

Authors:  Daniël P Melters; Jonathan Nye; Haiqing Zhao; Yamini Dalal
Journal:  Genes (Basel)       Date:  2015-08-07       Impact factor: 4.096

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