Literature DB >> 24637041

Replication-induced supercoiling: a neglected DNA transaction regulator?

Haojie Yu1, Peter Dröge2.   

Abstract

Dynamic (-) DNA supercoiling generated in the wake of translocating protein complexes is known to occur during transcription. Recent studies indicate that (-) superhelical tension also builds up specifically in the leading duplex during replication. Here, we argue that this unrecognized supercoiling is causally involved in the regulation of key DNA transactions and deserves further consideration.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Keywords:  DNA polymerase; DNA transactions; dynamic DNA supercoiling; leading strand duplex; parental DNA; protein translocation; replication

Mesh:

Substances:

Year:  2014        PMID: 24637041     DOI: 10.1016/j.tibs.2014.02.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  14 in total

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Authors:  David Levens; Laura Baranello; Fedor Kouzine
Journal:  Biophys Rev       Date:  2016-11-14

Review 2.  Controlling gene expression by DNA mechanics: emerging insights and challenges.

Authors:  David Levens; Laura Baranello; Fedor Kouzine
Journal:  Biophys Rev       Date:  2016-08-20

3.  Evidence that processing of ribonucleotides in DNA by topoisomerase 1 is leading-strand specific.

Authors:  Jessica S Williams; Anders R Clausen; Scott A Lujan; Lisette Marjavaara; Alan B Clark; Peter M Burgers; Andrei Chabes; Thomas A Kunkel
Journal:  Nat Struct Mol Biol       Date:  2015-03-09       Impact factor: 15.369

4.  Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome.

Authors:  Fedor Kouzine; Damian Wojtowicz; Laura Baranello; Arito Yamane; Steevenson Nelson; Wolfgang Resch; Kyong-Rim Kieffer-Kwon; Craig J Benham; Rafael Casellas; Teresa M Przytycka; David Levens
Journal:  Cell Syst       Date:  2017-02-22       Impact factor: 10.304

5.  Negative supercoils regulate meiotic crossover patterns in budding yeast.

Authors:  Taicong Tan; Yingjin Tan; Ying Wang; Xiao Yang; Binyuan Zhai; Shuxian Zhang; Xuan Yang; Hui Nie; Jinmin Gao; Jun Zhou; Liangran Zhang; Shunxin Wang
Journal:  Nucleic Acids Res       Date:  2022-10-14       Impact factor: 19.160

Review 6.  Spatiotemporal Coupling of DNA Supercoiling and Genomic Sequence Organization-A Timing Chain for the Bacterial Growth Cycle?

Authors:  Georgi Muskhelishvili; Patrick Sobetzko; Andrew Travers
Journal:  Biomolecules       Date:  2022-06-15

Review 7.  Processing ribonucleotides incorporated during eukaryotic DNA replication.

Authors:  Jessica S Williams; Scott A Lujan; Thomas A Kunkel
Journal:  Nat Rev Mol Cell Biol       Date:  2016-04-20       Impact factor: 94.444

Review 8.  The Balancing Act of Ribonucleotides in DNA.

Authors:  Susana M Cerritelli; Robert J Crouch
Journal:  Trends Biochem Sci       Date:  2016-03-17       Impact factor: 13.807

9.  Topoisomerase 1-dependent deletions initiated by incision at ribonucleotides are biased to the non-transcribed strand of a highly activated reporter.

Authors:  Jang-Eun Cho; Nayun Kim; Sue Jinks-Robertson
Journal:  Nucleic Acids Res       Date:  2015-08-13       Impact factor: 16.971

10.  Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity.

Authors:  Tung T Le; Xiang Gao; Seong Ha Park; Jaeyoon Lee; James T Inman; Joyce H Lee; Jessica L Killian; Ryan P Badman; James M Berger; Michelle D Wang
Journal:  Cell       Date:  2019-10-17       Impact factor: 41.582

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