Literature DB >> 24635672

Epigenetic stochasticity, nuclear structure and cancer: the implications for medicine.

A P Feinberg1.   

Abstract

The aim of this review is to summarize an evolution of thinking about the epigenetic basis of human cancer, from the earliest studies of altered DNA methylation in cancer to the modern comprehensive epigenomic era. Converging data from epigenetic studies of primary cancers and from experimental studies of chromatin in development and epithelial-mesenchymal transition suggest a role for epigenetic stochasticity as a driving force of cancer, with Darwinian selection of tumour cells at the expense of the host. This increased epigenetic stochasticity appears to be mediated by large-scale changes in DNA methylation and chromatin in domains associated with the nuclear lamina. The implications for diagnosis include the potential to identify stochastically disrupted progenitor cells years before cancer develops, and to target drugs to epigenetic drivers of gene expression instability rather than to mean effects per se.
© 2014 The Association for the Publication of the Journal of Internal Medicine.

Entities:  

Keywords:  DNA methylation; LOCKs; cancer; heterochromatin; nuclear structure

Mesh:

Year:  2014        PMID: 24635672      PMCID: PMC4065203          DOI: 10.1111/joim.12224

Source DB:  PubMed          Journal:  J Intern Med        ISSN: 0954-6820            Impact factor:   8.989


  22 in total

Review 1.  The history of cancer epigenetics.

Authors:  Andrew P Feinberg; Benjamin Tycko
Journal:  Nat Rev Cancer       Date:  2004-02       Impact factor: 60.716

2.  Epigenetic transgenerational actions of endocrine disruptors and male fertility.

Authors:  Matthew D Anway; Andrea S Cupp; Mehmet Uzumcu; Michael K Skinner
Journal:  Science       Date:  2005-06-03       Impact factor: 47.728

3.  Loss of imprinting of insulin-like growth factor-II (IGF2) gene in distinguishing specific biologic subtypes of Wilms tumor.

Authors:  J D Ravenel; K W Broman; E J Perlman; E L Niemitz; T M Jayawardena; D W Bell; D A Haber; H Uejima; A P Feinberg
Journal:  J Natl Cancer Inst       Date:  2001-11-21       Impact factor: 13.506

4.  Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains.

Authors:  Benjamin P Berman; Daniel J Weisenberger; Joseph F Aman; Toshinori Hinoue; Zachary Ramjan; Yaping Liu; Houtan Noushmehr; Christopher P E Lange; Cornelis M van Dijk; Rob A E M Tollenaar; David Van Den Berg; Peter W Laird
Journal:  Nat Genet       Date:  2011-11-27       Impact factor: 38.330

5.  Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer.

Authors:  Gary C Hon; R David Hawkins; Otavia L Caballero; Christine Lo; Ryan Lister; Mattia Pelizzola; Armand Valsesia; Zhen Ye; Samantha Kuan; Lee E Edsall; Anamaria Aranha Camargo; Brian J Stevenson; Joseph R Ecker; Vineet Bafna; Robert L Strausberg; Andrew J Simpson; Bing Ren
Journal:  Genome Res       Date:  2011-12-07       Impact factor: 9.043

6.  Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation.

Authors:  Andrew E Teschendorff; Allison Jones; Heidi Fiegl; Alexandra Sargent; Joanna J Zhuang; Henry C Kitchener; Martin Widschwendter
Journal:  Genome Med       Date:  2012-03-27       Impact factor: 11.117

7.  Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition.

Authors:  Oliver G McDonald; Hao Wu; Winston Timp; Akiko Doi; Andrew P Feinberg
Journal:  Nat Struct Mol Biol       Date:  2011-07-03       Impact factor: 15.369

8.  Distant metastasis occurs late during the genetic evolution of pancreatic cancer.

Authors:  Shinichi Yachida; Siân Jones; Ivana Bozic; Tibor Antal; Rebecca Leary; Baojin Fu; Mihoko Kamiyama; Ralph H Hruban; James R Eshleman; Martin A Nowak; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Christine A Iacobuzio-Donahue
Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962

9.  Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells.

Authors:  Bo Wen; Hao Wu; Yoichi Shinkai; Rafael A Irizarry; Andrew P Feinberg
Journal:  Nat Genet       Date:  2009-01-18       Impact factor: 38.330

10.  Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization.

Authors:  Kasper D Hansen; Sarven Sabunciyan; Ben Langmead; Noemi Nagy; Rebecca Curley; Georg Klein; Eva Klein; Daniel Salamon; Andrew P Feinberg
Journal:  Genome Res       Date:  2013-09-25       Impact factor: 9.043

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  23 in total

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Authors:  He Huang; Shu Lin; Benjamin A Garcia; Yingming Zhao
Journal:  Chem Rev       Date:  2015-02-17       Impact factor: 60.622

2.  Genetic Determinants of Epigenetic Patterns: Providing Insight into Disease.

Authors:  Emma Cazaly; Jac Charlesworth; Joanne L Dickinson; Adele F Holloway
Journal:  Mol Med       Date:  2015-03-26       Impact factor: 6.354

3.  Simulation and inference algorithms for stochastic biochemical reaction networks: from basic concepts to state-of-the-art.

Authors:  David J Warne; Ruth E Baker; Matthew J Simpson
Journal:  J R Soc Interface       Date:  2019-02-28       Impact factor: 4.118

Review 4.  Origins of human disease: the chrono-epigenetic perspective.

Authors:  Edward Saehong Oh; Art Petronis
Journal:  Nat Rev Genet       Date:  2021-04-26       Impact factor: 53.242

Review 5.  SWI/SNF chromatin remodeling complexes and cancer.

Authors:  Jaclyn A Biegel; Tracy M Busse; Bernard E Weissman
Journal:  Am J Med Genet C Semin Med Genet       Date:  2014-08-28       Impact factor: 3.908

6.  Cell-to-Cell Variation in Gene Expression for Cultured Human Cells Is Controlled in Trans by Diverse Genes: Implications for the Pathobiology of Aging.

Authors:  Jiaming Zhang; Nikolay Burnaevskiy; James Annis; Wenyan Han; Deyin Hou; Paula Ladd; Lin Lee; Alexander R Mendenhall; Junko Oshima; George M Martin
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2020-11-13       Impact factor: 6.053

7.  Decoding the DNA Methylome of Mantle Cell Lymphoma in the Light of the Entire B Cell Lineage.

Authors:  Ana C Queirós; Renée Beekman; Roser Vilarrasa-Blasi; Martí Duran-Ferrer; Guillem Clot; Angelika Merkel; Emanuele Raineri; Nuria Russiñol; Giancarlo Castellano; Sílvia Beà; Alba Navarro; Marta Kulis; Núria Verdaguer-Dot; Pedro Jares; Anna Enjuanes; María José Calasanz; Anke Bergmann; Inga Vater; Itziar Salaverría; Harmen J G van de Werken; Wyndham H Wilson; Avik Datta; Paul Flicek; Romina Royo; Joost Martens; Eva Giné; Armando Lopez-Guillermo; Hendrik G Stunnenberg; Wolfram Klapper; Christiane Pott; Simon Heath; Ivo G Gut; Reiner Siebert; Elías Campo; José I Martín-Subero
Journal:  Cancer Cell       Date:  2016-11-14       Impact factor: 31.743

Review 8.  Cell-to-cell variation in gene expression and the aging process.

Authors:  Alexander R Mendenhall; George M Martin; Matt Kaeberlein; Rozalyn M Anderson
Journal:  Geroscience       Date:  2021-02-17       Impact factor: 7.581

9.  Stochastic epigenetic outliers can define field defects in cancer.

Authors:  Andrew E Teschendorff; Allison Jones; Martin Widschwendter
Journal:  BMC Bioinformatics       Date:  2016-04-22       Impact factor: 3.169

10.  Genome-wide methylation study on depression: differential methylation and variable methylation in monozygotic twins.

Authors:  A Córdova-Palomera; M Fatjó-Vilas; C Gastó; V Navarro; M-O Krebs; L Fañanás
Journal:  Transl Psychiatry       Date:  2015-04-28       Impact factor: 6.222

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