Literature DB >> 24632658

Feature Selection in the Tensor Product Feature Space.

Aaron Smalter1, Jun Huan1, Gerald Lushington2.   

Abstract

Classifying objects that are sampled jointly from two or more domains has many applications. The tensor product feature space is useful for modeling interactions between feature sets in different domains but feature selection in the tensor product feature space is challenging. Conventional feature selection methods ignore the structure of the feature space and may not provide the optimal results. In this paper we propose methods for selecting features in the original feature spaces of different domains. We obtained sparsity through two approaches, one using integer quadratic programming and another using L1-norm regularization. Experimental studies on biological data sets validate our approach.

Entities:  

Year:  2009        PMID: 24632658      PMCID: PMC3951172          DOI: 10.1109/ICDM.2009.101

Source DB:  PubMed          Journal:  Proc IEEE Int Conf Data Min        ISSN: 1550-4786


  12 in total

1.  A simple and efficient algorithm for gene selection using sparse logistic regression.

Authors:  S K Shevade; S S Keerthi
Journal:  Bioinformatics       Date:  2003-11-22       Impact factor: 6.937

2.  Learning to predict protein-protein interactions from protein sequences.

Authors:  Shawn M Gomez; William Stafford Noble; Andrey Rzhetsky
Journal:  Bioinformatics       Date:  2003-10-12       Impact factor: 6.937

3.  CHEMICAL COMPOUND CLASSIFICATION WITH AUTOMATICALLY MINED STRUCTURE PATTERNS.

Authors:  A M Smalter; J Huan; G H Lushington
Journal:  Proc Asia Pac Bioinform Conf       Date:  2008

4.  Kernel methods for predicting protein-protein interactions.

Authors:  Asa Ben-Hur; William Stafford Noble
Journal:  Bioinformatics       Date:  2005-06       Impact factor: 6.937

5.  Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.

Authors:  Jean-Loup Faulon; Milind Misra; Shawn Martin; Ken Sale; Rajat Sapra
Journal:  Bioinformatics       Date:  2007-11-23       Impact factor: 6.937

6.  Alignment of molecular networks by integer quadratic programming.

Authors:  Li Zhenping; Shihua Zhang; Yong Wang; Xiang-Sun Zhang; Luonan Chen
Journal:  Bioinformatics       Date:  2007-04-27       Impact factor: 6.937

7.  Protein-ligand interaction prediction: an improved chemogenomics approach.

Authors:  Laurent Jacob; Jean-Philippe Vert
Journal:  Bioinformatics       Date:  2008-08-01       Impact factor: 6.937

8.  Virtual screening of GPCRs: an in silico chemogenomics approach.

Authors:  Laurent Jacob; Brice Hoffmann; Véronique Stoven; Jean-Philippe Vert
Journal:  BMC Bioinformatics       Date:  2008-09-06       Impact factor: 3.169

9.  DrugBank: a comprehensive resource for in silico drug discovery and exploration.

Authors:  David S Wishart; Craig Knox; An Chi Guo; Savita Shrivastava; Murtaza Hassanali; Paul Stothard; Zhan Chang; Jennifer Woolsey
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  Human Protein Reference Database--2009 update.

Authors:  T S Keshava Prasad; Renu Goel; Kumaran Kandasamy; Shivakumar Keerthikumar; Sameer Kumar; Suresh Mathivanan; Deepthi Telikicherla; Rajesh Raju; Beema Shafreen; Abhilash Venugopal; Lavanya Balakrishnan; Arivusudar Marimuthu; Sutopa Banerjee; Devi S Somanathan; Aimy Sebastian; Sandhya Rani; Somak Ray; C J Harrys Kishore; Sashi Kanth; Mukhtar Ahmed; Manoj K Kashyap; Riaz Mohmood; Y L Ramachandra; V Krishna; B Abdul Rahiman; Sujatha Mohan; Prathibha Ranganathan; Subhashri Ramabadran; Raghothama Chaerkady; Akhilesh Pandey
Journal:  Nucleic Acids Res       Date:  2008-11-06       Impact factor: 16.971

View more
  3 in total

1.  Tensor-based Multi-view Feature Selection with Applications to Brain Diseases.

Authors:  Bokai Cao; Lifang He; Xiangnan Kong; Philip S Yu; Zhifeng Hao; Ann B Ragin
Journal:  Proc IEEE Int Conf Data Min       Date:  2014-12

Review 2.  A review of heterogeneous data mining for brain disorder identification.

Authors:  Bokai Cao; Xiangnan Kong; Philip S Yu
Journal:  Brain Inform       Date:  2015-09-30

3.  Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures.

Authors:  Laura Frølich; Tobias Søren Andersen; Morten Mørup
Journal:  BMC Bioinformatics       Date:  2018-05-30       Impact factor: 3.169

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.