Literature DB >> 24632255

Arsenic(V) reduction in relation to Iron(III) transformation and molecular characterization of the structural and functional microbial community in sediments of a basin-fill aquifer in Northern Utah.

Babur S Mirza1, Subathra Muruganandam, Xianyu Meng, Darwin L Sorensen, R Ryan Dupont, Joan E McLean.   

Abstract

Basin-fill aquifers of the Southwestern United States are associated with elevated concentrations of arsenic (As) in groundwater. Many private domestic wells in the Cache Valley Basin, UT, have As concentrations in excess of the U.S. EPA drinking water limit. Thirteen sediment cores were collected from the center of the valley at the depth of the shallow groundwater and were sectioned into layers based on redoxmorphic features. Three of the layers, two from redox transition zones and one from a depletion zone, were used to establish microcosms. Microcosms were treated with groundwater (GW) or groundwater plus glucose (GW+G) to investigate the extent of As reduction in relation to iron (Fe) transformation and characterize the microbial community structure and function by sequencing 16S rRNA and arsenate dissimilatory reductase (arrA) genes. Under the carbon-limited conditions of the GW treatment, As reduction was independent of Fe reduction, despite the abundance of sequences related to Geobacter and Shewanella, genera that include a variety of dissimilatory iron-reducing bacteria. The addition of glucose, an electron donor and carbon source, caused substantial shifts toward domination of the bacterial community by Clostridium-related organisms, and As reduction was correlated with Fe reduction for the sediments from the redox transition zone. The arrA gene sequencing from microcosms at day 54 of incubation showed the presence of 14 unique phylotypes, none of which were related to any previously described arrA gene sequence, suggesting a unique community of dissimilatory arsenate-respiring bacteria in the Cache Valley Basin.

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Year:  2014        PMID: 24632255      PMCID: PMC4018920          DOI: 10.1128/AEM.00240-14

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  50 in total

1.  DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences.

Authors:  Erik S Wright; L Safak Yilmaz; Daniel R Noguera
Journal:  Appl Environ Microbiol       Date:  2011-11-18       Impact factor: 4.792

2.  Two new arsenate/sulfate-reducing bacteria: mechanisms of arsenate reduction.

Authors:  J M Macy; J M Santini; B V Pauling; A H O'Neill; L I Sly
Journal:  Arch Microbiol       Date:  2000-01       Impact factor: 2.552

3.  Contrasting effects of dissimilatory iron (III) and arsenic (V) reduction on arsenic retention and transport.

Authors:  Benjamin D Kocar; Mitchell J Herbel; Katherine J Tufano; Scott Fendorf
Journal:  Environ Sci Technol       Date:  2006-11-01       Impact factor: 9.028

4.  Iron and arsenic release from aquifer solids in response to biostimulation.

Authors:  J E McLean; R R Dupont; D L Sorensen
Journal:  J Environ Qual       Date:  2006-07-06       Impact factor: 2.751

5.  Microbe grows by reducing arsenic.

Authors:  D Ahmann; A L Roberts; L R Krumholz; F M Morel
Journal:  Nature       Date:  1994-10-27       Impact factor: 49.962

Review 6.  A plasmid-encoded anion-translocating ATPase.

Authors:  B P Rosen; C M Hsu; C E Karkaria; P Kaur; J B Owolabi; L S Tisa
Journal:  Biochim Biophys Acta       Date:  1990-07-25

7.  Role of iron in controlling speciation and mobilization of arsenic in subsurface environment.

Authors:  Purnendu Bose; Archana Sharma
Journal:  Water Res       Date:  2002-11       Impact factor: 11.236

8.  PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference.

Authors:  Stéphane Guindon; Franck Lethiec; Patrice Duroux; Olivier Gascuel
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.

Authors:  Micah Hamady; Catherine Lozupone; Rob Knight
Journal:  ISME J       Date:  2009-08-27       Impact factor: 10.302

10.  MUSCLE: a multiple sequence alignment method with reduced time and space complexity.

Authors:  Robert C Edgar
Journal:  BMC Bioinformatics       Date:  2004-08-19       Impact factor: 3.169

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  5 in total

1.  Impact of soil salinity on the microbial structure of halophyte rhizosphere microbiome.

Authors:  Salma Mukhtar; Babur Saeed Mirza; Samina Mehnaz; Muhammad Sajjad Mirza; Joan Mclean; Kauser Abdulla Malik
Journal:  World J Microbiol Biotechnol       Date:  2018-08-20       Impact factor: 3.312

2.  Isolation, identification and characterization of arsenic transforming exogenous endophytic Citrobacter sp. RPT from roots of Pteris vittata.

Authors:  T Selvankumar; R Radhika; R Mythili; S Arunprakash; P Srinivasan; M Govarthanan; Hyunook Kim
Journal:  3 Biotech       Date:  2017-07-26       Impact factor: 2.406

3.  New Arsenate Reductase Gene (arrA) PCR Primers for Diversity Assessment and Quantification in Environmental Samples.

Authors:  Babur S Mirza; Darwin L Sorensen; R Ryan Dupont; Joan E McLean
Journal:  Appl Environ Microbiol       Date:  2017-02-01       Impact factor: 4.792

4.  Dissimilatory Arsenate Reduction and In Situ Microbial Activities and Diversity in Arsenic-rich Groundwater of Chianan Plain, Southwestern Taiwan.

Authors:  Suvendu Das; Chia-Chuan Liu; Jiin-Shuh Jean; Tsunglin Liu
Journal:  Microb Ecol       Date:  2015-07-29       Impact factor: 4.552

5.  Impact of Arsenite on the Bacterial Community Structure and Diversity in Soil.

Authors:  Dian-Tao Dong; Shigeki Yamamura; Seigo Amachi
Journal:  Microbes Environ       Date:  2016-02-20       Impact factor: 2.912

  5 in total

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