Literature DB >> 24625875

Draft Genome Sequence of Bacillus thuringiensis Serovar Tolworthi Strain Na205-3, an Isolate Toxic for Helicoverpa armigera.

Leopoldo Palma1, Delia Muñoz, Jesús Murillo, Primitivo Caballero.   

Abstract

We report here the complete annotated 6,510,053-bp draft genome sequence of Bacillus thuringiensis serovar tolworthi strain Na205-3, which is toxic for Helicoverpa armigera. This strain potentially contains nine insecticidal toxin genes homologous to cry1Aa12, cry1Ab1, cry1Ab8, cry1Ba1, cry1Af1, cry1Ia10, vip1Bb1, vip2Ba2, and vip3Aa6.

Entities:  

Year:  2014        PMID: 24625875      PMCID: PMC3953196          DOI: 10.1128/genomeA.00187-14

Source DB:  PubMed          Journal:  Genome Announc


GENOME ANNOUNCEMENT

Bacillus thuringiensis (Bacillales: Bacillaceae), one of the best-characterized entomopathogenic bacteria, carries plasmids bearing a variety of genes coding for proteins with valuable insecticidal characteristics (1). These proteins can be classified into distinct protein groups according to their amino acid identities and protein structures: Cry and Cyt proteins (δ-endotoxins) (2); vegetative insecticidal proteins Vip1/Vip2 (binary toxin) (3), Vip3 (4), and Vip4 (http://www.lifesci.sussex.ac.uk/Home/Neil_Crickmore/Bt/); Bin-like and Mtx-like proteins (1, 5); the secreted insecticidal proteins Sip (6); accessory proteins P19 and P20 (7); and enhancin-like proteins (8). In this work, we report the draft genome sequence of Bacillus thuringiensis serovar tolworthi strain Na205-3, which is toxic against Helicoverpa armigera (Lepidoptera: Noctuidae) (9). Purified total DNA from strain Na205-3 was sequenced at the Beijing Genomics Institute (BGI) (Shenzhen, China) using high-throughput Illumina sequencing technology. The reads were assembled using SOAPdenovo (version 1.05) and produced 169 contigs totaling 6,510,053 bp, with a maximum scaffold size of 427,627 bp, an N50 length of 161,129 bp, and 34.7% G+C content. Genome annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released in 2013), although it was also analyzed with BLAST (10) using a custom insecticidal toxin database, the RAST server (11), and the BtToxin_scanner (12). The custom insecticidal toxin database was constructed with amino acid sequences of Cry and Cyt proteins, Bin-like and Mtx-like proteins, Vip1/Vip2, Vip3, and Sip1A proteins (13), accessory proteins P19 and P20, and the enhancin-like Bel protein. The Na205-3 draft genome sequence carries nine insecticidal toxin genes homologous to cry1Aa12, cry1Ab1, cry1Ab8, cry1Ba1, cry1Af1, cry1Ia10, vip1Bb1, vip2Ba2, and vip3Aa6, a putative etx_mtx toxin gene, and 1 bel (enhancin-like) gene. This ample repertoire of insecticidal genes implies that strain Na205-3 might have a wider host range than was previously thought.

Nucleotide sequence accession numbers.

This whole-genome shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession no. AYXQ00000000. The version described in this paper is version AYXQ01000000.
  11 in total

Review 1.  Structure, diversity, and evolution of protein toxins from spore-forming entomopathogenic bacteria.

Authors:  Ruud A de Maagd; Alejandra Bravo; Colin Berry; Neil Crickmore; H Ernest Schnepf
Journal:  Annu Rev Genet       Date:  2003       Impact factor: 16.830

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Effect of accessory proteins P19 and P20 on cytolytic activity of Cyt1Aa from Bacillus thuringiensis subsp. israelensis in Escherichia coli.

Authors:  R Manasherob; A Zaritsky; E Ben-Dov; D Saxena; Z Barak; M Einav
Journal:  Curr Microbiol       Date:  2001-11       Impact factor: 2.188

Review 4.  The bacterium, Lysinibacillus sphaericus, as an insect pathogen.

Authors:  Colin Berry
Journal:  J Invertebr Pathol       Date:  2011-11-23       Impact factor: 2.841

5.  Gene knockout demonstrates that vip3A contributes to the pathogenesis of Bacillus thuringiensis toward Agrotis ipsilon and Spodoptera exigua.

Authors:  W P Donovan; J C Donovan; J T Engleman
Journal:  J Invertebr Pathol       Date:  2001-07       Impact factor: 2.841

6.  Mining new crystal protein genes from Bacillus thuringiensis on the basis of mixed plasmid-enriched genome sequencing and a computational pipeline.

Authors:  Weixing Ye; Lei Zhu; Yingying Liu; Neil Crickmore; Donghai Peng; Lifang Ruan; Ming Sun
Journal:  Appl Environ Microbiol       Date:  2012-04-27       Impact factor: 4.792

Review 7.  Bacillus thuringiensis and its pesticidal crystal proteins.

Authors:  E Schnepf; N Crickmore; J Van Rie; D Lereclus; J Baum; J Feitelson; D R Zeigler; D H Dean
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

8.  Discovery and characterization of Sip1A: A novel secreted protein from Bacillus thuringiensis with activity against coleopteran larvae.

Authors:  William P Donovan; James T Engleman; Judith C Donovan; James A Baum; Greg J Bunkers; David J Chi; William P Clinton; Leigh English; Gregory R Heck; Oliver M Ilagan; Karina C Krasomil-Osterfeld; John W Pitkin; James K Roberts; Matthew R Walters
Journal:  Appl Microbiol Biotechnol       Date:  2006-02-18       Impact factor: 4.813

9.  Bacillus thuringiensis bel protein enhances the toxicity of Cry1Ac protein to Helicoverpa armigera larvae by degrading insect intestinal mucin.

Authors:  Shangling Fang; Li Wang; Wei Guo; Xia Zhang; Donghai Peng; Chunping Luo; Ziniu Yu; Ming Sun
Journal:  Appl Environ Microbiol       Date:  2009-06-19       Impact factor: 4.792

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

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1.  Complete Genome Sequence of Bacillus thuringiensis Serovar Tolworthi Strain Pasteur Institute Standard.

Authors:  Kohzo Kanda; Kaede Nakashima; Yukio Nagano
Journal:  Genome Announc       Date:  2015-07-02

Review 2.  Bacillus thuringiensis toxins: an overview of their biocidal activity.

Authors:  Leopoldo Palma; Delia Muñoz; Colin Berry; Jesús Murillo; Primitivo Caballero
Journal:  Toxins (Basel)       Date:  2014-12-11       Impact factor: 4.546

3.  Draft Genome Sequence of the Entomopathogenic Bacterium Bacillus pumilus 15.1, a Strain Highly Toxic to the Mediterranean Fruit Fly Ceratitis capitata.

Authors:  Diana C García-Ramón; Leopoldo Palma; Colin Berry; Antonio Osuna; Susana Vílchez
Journal:  Genome Announc       Date:  2015-09-24

4.  Genetic Environment of cry1 Genes Indicates Their Common Origin.

Authors:  Krzysztof Fiedoruk; Tamara Daniluk; Jacques Mahillon; Katarzyna Leszczynska; Izabela Swiecicka
Journal:  Genome Biol Evol       Date:  2017-09-01       Impact factor: 3.416

  4 in total

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