Literature DB >> 24606143

Metabolic and nontranscriptional circadian clocks: eukaryotes.

Akhilesh B Reddy1, Guillaume Rey.   

Abstract

Circadian clocks are cellular timekeeping mechanisms that coordinate behavior and physiology around the 24-h day in most living organisms. Misalignment of an organism's clock with its environment is associated with long-term adverse fitness consequences, as exemplified by the link between circadian disruption and various age-related diseases in humans. Current eukaryotic models of the circadian oscillator rely on transcription/translation feedback loop mechanisms, supplemented with accessory cytosolic loops that connect them to cellular physiology. However, mounting evidence is questioning the absolute necessity of transcription-based oscillators for circadian rhythmicity, supported by the recent discovery of oxidation-reduction cycles of peroxiredoxin proteins, which persist even in the absence of transcription. A more fundamental mechanism based on metabolic cycles could thus underlie circadian transcriptional and cytosolic rhythms, thereby promoting circadian oscillations to integral properties of cellular metabolism.

Entities:  

Keywords:  oscillator; oxidation-reduction; peroxiredoxin; posttranscriptional; posttranslational; redox

Mesh:

Substances:

Year:  2014        PMID: 24606143      PMCID: PMC4768355          DOI: 10.1146/annurev-biochem-060713-035623

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  179 in total

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Authors:  Till Roenneberg; David Morse
Journal:  Nature       Date:  1993-03-25       Impact factor: 49.962

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Authors:  R D Burgoyne
Journal:  FEBS Lett       Date:  1978-10-01       Impact factor: 4.124

4.  SIRT1 regulates circadian clock gene expression through PER2 deacetylation.

Authors:  Gad Asher; David Gatfield; Markus Stratmann; Hans Reinke; Charna Dibner; Florian Kreppel; Raul Mostoslavsky; Frederick W Alt; Ueli Schibler
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

5.  Coupling of a core post-translational pacemaker to a slave transcription/translation feedback loop in a circadian system.

Authors:  Ximing Qin; Mark Byrne; Yao Xu; Tetsuya Mori; Carl Hirschie Johnson
Journal:  PLoS Biol       Date:  2010-06-15       Impact factor: 8.029

6.  Closing the circadian loop: CLOCK-induced transcription of its own inhibitors per and tim.

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Journal:  Science       Date:  1998-06-05       Impact factor: 47.728

7.  Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally.

Authors:  Jörg Morf; Guillaume Rey; Kim Schneider; Markus Stratmann; Jun Fujita; Felix Naef; Ueli Schibler
Journal:  Science       Date:  2012-08-23       Impact factor: 47.728

8.  Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions.

Authors:  Jürgen A Ripperger; Ueli Schibler
Journal:  Nat Genet       Date:  2006-02-12       Impact factor: 38.330

Review 9.  Molecular components of the mammalian circadian clock.

Authors:  Caroline H Ko; Joseph S Takahashi
Journal:  Hum Mol Genet       Date:  2006-10-15       Impact factor: 6.150

10.  Histone methyltransferase MLL3 contributes to genome-scale circadian transcription.

Authors:  Utham K Valekunja; Rachel S Edgar; Malgorzata Oklejewicz; Gijsbertus T J van der Horst; John S O'Neill; Filippo Tamanini; Daniel J Turner; Akhilesh B Reddy
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-07       Impact factor: 11.205

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  36 in total

Review 1.  AKT keeps the beat in CLOCK's circadian rhythm.

Authors:  Masayuki Noguchi; Noriyuki Hirata; Futoshi Suizu
Journal:  J Biol Chem       Date:  2018-06-08       Impact factor: 5.157

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Authors:  Nikolay B Milev; Sue-Goo Rhee; Akhilesh B Reddy
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-05-01       Impact factor: 10.005

Review 3.  Emerging role of circadian rhythm in bone remodeling.

Authors:  Qian-Yuan Wu; Jian Wang; Xiao Tong; Jie Chen; Bei Wang; Zong-Ning Miao; Xia Li; Jun-Xing Ye; Feng-Lai Yuan
Journal:  J Mol Med (Berl)       Date:  2018-11-16       Impact factor: 4.599

Review 4.  The molecular basis of metabolic cycles and their relationship to circadian rhythms.

Authors:  Jane Mellor
Journal:  Nat Struct Mol Biol       Date:  2016-12-06       Impact factor: 15.369

5.  High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation.

Authors:  James Matt Zones; Ian K Blaby; Sabeeha S Merchant; James G Umen
Journal:  Plant Cell       Date:  2015-10-02       Impact factor: 11.277

6.  Environmental Regulation of Heterosis in the Allopolyploid Arabidopsis suecica.

Authors:  Erik M Solhaug; Jacie Ihinger; Maria Jost; Veronica Gamboa; Blaine Marchant; Denise Bradford; R W Doerge; Anand Tyagi; Amy Replogle; Andreas Madlung
Journal:  Plant Physiol       Date:  2016-02-19       Impact factor: 8.340

7.  Analysis of the redox oscillations in the circadian clockwork.

Authors:  Nikolay B Milev; Guillaume Rey; Utham K Valekunja; Rachel S Edgar; John S O'Neill; Akhilesh B Reddy
Journal:  Methods Enzymol       Date:  2014-12-26       Impact factor: 1.600

8.  Identifying Novel Transcriptional Regulators with Circadian Expression.

Authors:  Sandra Schick; Kolja Becker; Sudhir Thakurela; David Fournier; Mareike Hildegard Hampel; Stefan Legewie; Vijay K Tiwari
Journal:  Mol Cell Biol       Date:  2015-12-07       Impact factor: 4.272

9.  Diurnal oscillations of endogenous H2O2 sustained by p66Shc regulate circadian clocks.

Authors:  Jian-Fei Pei; Xun-Kai Li; Wen-Qi Li; Qian Gao; Yang Zhang; Xiao-Man Wang; Jia-Qi Fu; Shen-Shen Cui; Jia-Hua Qu; Xiang Zhao; De-Long Hao; Dapeng Ju; Na Liu; Kate S Carroll; Jing Yang; Eric Erquan Zhang; Ji-Min Cao; Hou-Zao Chen; De-Pei Liu
Journal:  Nat Cell Biol       Date:  2019-11-25       Impact factor: 28.824

Review 10.  Transcriptional architecture of the mammalian circadian clock.

Authors:  Joseph S Takahashi
Journal:  Nat Rev Genet       Date:  2016-12-19       Impact factor: 53.242

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