Literature DB >> 24605867

Fine refinement of solid-state molecular structures of Leu- and Met-enkephalins by NMR crystallography.

Tomasz Pawlak1, Marek J Potrzebowski.   

Abstract

This paper presents a methodology that allows the fine refinement of the crystal and molecular structure for compounds for which the data deposited in the crystallographic bases are of poor quality. Such species belong to the group of samples with molecular disorder. In the Cambridge Crystallographic Data Center (CCDC), there are approximately 22,000 deposited structures with an R-factor over 10. The powerful methodology we present employs crystal data for Leu-enkephalin (two crystallographic forms) with R-factor values of 14.0 and 8.9 and for Met-enkephalin (one form) with an R-factor of 10.5. NMR crystallography was employed in testing the X-ray data and the quality of the structure refinement. The GIPAW (gauge invariant projector augmented wave) method was used to optimize the coordinates of the enkephalins and to compute NMR parameters. As we reveal, this complementary approach makes it possible to generate a reasonable set of new coordinates that better correlate to real samples. This methodology is general and can be employed in the study of each compound possessing magnetically active nuclei.

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Year:  2014        PMID: 24605867     DOI: 10.1021/jp500379e

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  TensorView: A software tool for displaying NMR tensors.

Authors:  Robert P Young; Corbin R Lewis; Chen Yang; Luther Wang; James K Harper; Leonard J Mueller
Journal:  Magn Reson Chem       Date:  2018-11-06       Impact factor: 2.447

2.  Solid-State Study of the Structure, Dynamics, and Thermal Processes of Safinamide Mesylate─A New Generation Drug for the Treatment of Neurodegenerative Diseases.

Authors:  Tomasz Pawlak; Marcin Oszajca; Małgorzata Szczesio; Marek J Potrzebowski
Journal:  Mol Pharm       Date:  2021-12-02       Impact factor: 4.939

3.  Single-Crystal X-ray and Solid-State NMR Characterisation of AND-1184 and Its Hydrochloride Form.

Authors:  Tomasz Pawlak; Małgorzata Szczesio; Marek J Potrzebowski
Journal:  Materials (Basel)       Date:  2021-11-25       Impact factor: 3.623

4.  Exploring Conformational Preferences of Leu-enkephalin Using the Conformational Search and Double-Hybrid DFT Energy Calculations.

Authors:  Hae Sook Park; Byung Jin Byun; Young Kee Kang
Journal:  ACS Omega       Date:  2022-07-26

5.  Synergy of Solid-State NMR, Single-Crystal X-ray Diffraction, and Crystal Structure Prediction Methods: A Case Study of Teriflunomide (TFM).

Authors:  Tomasz Pawlak; Isaac Sudgen; Grzegorz Bujacz; Dinu Iuga; Steven P Brown; Marek J Potrzebowski
Journal:  Cryst Growth Des       Date:  2021-05-10       Impact factor: 4.076

  5 in total

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