Literature DB >> 24600118

Reverse transcription loop-mediated isothermal amplification (RT-LAMP) for diagnosis of dengue.

Ajay Kumar Sahni1, Naveen Grover2, Ajay Sharma3, Inam Danish Khan4, Jugal Kishore5.   

Abstract

BACKGROUND: Dengue is an emerging public health problem causing serious morbidity and mortality in tropical developing countries. Early, sensitive and specific diagnosis is paramount for clinical decision making. Currently available diagnostic tests are limited in scope and utility. This study highlights applicability of RT-LAMP in dengue diagnosis.
METHODS: 100 dengue confirmed cases, 100 dengue negative cases and 79 healthy negative controls from dengue epidemic between Sep 2009 to Jul 2011 were included. Dengue cases were profiled using WHO guidelines 2006, haematological and biochemical parameters evaluated and diagnosed using NS1 antigen, IgM and IgG enzyme immunoassay, RT-PCR and RT-LAMP. Positive cases were serotyped, genotyped and various tests were compared.
RESULTS: Mean haematocrit, PT, PTT, platelet count, activated lymphocytes, serum fibrinogen, transaminases, bilirubin, lactate dehydrogenase, protein and sodium were significantly elevated in DHF/DSS as compared to DF. NS1 antigen, RT-PCR and RT-LAMP were sensitive during 1-3 days while μ-capture IgM EIA was specific after 5-7 days of initial infection. DEN-1 genotype III was predominant.
CONCLUSION: Deranged haematocrit and liver function tests are indicators of the severity of the disease. RT-LAMP is rapid, cost effective, highly sensitive and specific qualitative and quantitative technique which can detect dengue infection in both early and intermediary stages when NS1 antigen titres are not in the detectable range and the IgM antibody titres have just started to rise. Its superiority over existing techniques, amenability for automation and promising utility in low resource healthcare setups and field conditions raise it as the new gold standard for dengue diagnosis.

Entities:  

Keywords:  Dengue; Gold standard; Reverse transcriptase polymerase chain reaction (RT-PCR); Reverse transcription loop-mediated isothermal amplification (RT-LAMP)

Year:  2012        PMID: 24600118      PMCID: PMC3862550          DOI: 10.1016/j.mjafi.2012.07.017

Source DB:  PubMed          Journal:  Med J Armed Forces India        ISSN: 0377-1237


  20 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  The dengue and dengue hemorrhagic fever epidemic in Puerto Rico, 1994-1995.

Authors:  J G Rigau-Pérez; A V Vorndam; G G Clark
Journal:  Am J Trop Med Hyg       Date:  2001 Jan-Feb       Impact factor: 2.345

3.  Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction.

Authors:  R S Lanciotti; C H Calisher; D J Gubler; G J Chang; A V Vorndam
Journal:  J Clin Microbiol       Date:  1992-03       Impact factor: 5.948

4.  Serological investigation of a febrile outbreak in Delhi, India, using a rapid immunochromatographic test.

Authors:  D W Vaughn
Journal:  J Clin Microbiol       Date:  1998-09       Impact factor: 5.948

Review 5.  Advances in dengue diagnosis.

Authors:  M G Guzmán; G Kourí
Journal:  Clin Diagn Lab Immunol       Date:  1996-11

6.  Epidemic dengue transmission in southern Sumatra, Indonesia.

Authors:  A L Corwin; R P Larasati; M J Bangs; S Wuryadi; S Arjoso; N Sukri; E Listyaningsih; S Hartati; R Namursa; Z Anwar; S Chandra; B Loho; H Ahmad; J R Campbell; K R Porter
Journal:  Trans R Soc Trop Med Hyg       Date:  2001 May-Jun       Impact factor: 2.184

7.  Dengue viremia titer, antibody response pattern, and virus serotype correlate with disease severity.

Authors:  D W Vaughn; S Green; S Kalayanarooj; B L Innis; S Nimmannitya; S Suntayakorn; T P Endy; B Raengsakulrach; A L Rothman; F A Ennis; A Nisalak
Journal:  J Infect Dis       Date:  2000-01       Impact factor: 5.226

8.  Emergence and continued circulation of dengue-2 (genotype IV) virus strains in northern India.

Authors:  Paban Kumar Dash; Man Mohan Parida; Parag Saxena; Manoj Kumar; Arvind Rai; Sayeed Tazeen Pasha; Asha Mukul Jana
Journal:  J Med Virol       Date:  2004-10       Impact factor: 2.327

Review 9.  Dengue: the risk to developed and developing countries.

Authors:  T P Monath
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-29       Impact factor: 11.205

10.  Development of group- and serotype-specific one-step SYBR green I-based real-time reverse transcription-PCR assay for dengue virus.

Authors:  Pei-Yun Shu; Shu-Fen Chang; Yu-Chung Kuo; Yi-Yun Yueh; Li-Jung Chien; Chien-Lin Sue; Ting-Hsiang Lin; Jyh-Hsiung Huang
Journal:  J Clin Microbiol       Date:  2003-06       Impact factor: 5.948

View more
  8 in total

1.  Dengue: "plus ça change, plus c'est la même chose".

Authors:  Velu Nair
Journal:  Med J Armed Forces India       Date:  2013-07

2.  Taguchi array optimization of the reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for sensitive and rapid detection of dengue virus serotype 2.

Authors:  Mohammad Shoushtari; Mostafa Salehi-Vaziri; Farzin Roohvand; Arash Arashkia; Tahmineh Jalali; Kayhan Azadmanesh
Journal:  Biotechnol Lett       Date:  2021-09-17       Impact factor: 2.461

3.  Recombinase Polymerase Amplification Assay for Rapid Diagnostics of Dengue Infection.

Authors:  Ahmed Abd El Wahed; Pranav Patel; Oumar Faye; Sasikanya Thaloengsok; Doris Heidenreich; Ponpan Matangkasombut; Khajohnpong Manopwisedjaroen; Anavaj Sakuntabhai; Amadou A Sall; Frank T Hufert; Manfred Weidmann
Journal:  PLoS One       Date:  2015-06-15       Impact factor: 3.240

4.  Development and validation of four one-step real-time RT-LAMP assays for specific detection of each dengue virus serotype.

Authors:  Benjamin Lopez-Jimena; Michaël Bekaert; Mohammed Bakheit; Sieghard Frischmann; Pranav Patel; Etienne Simon-Loriere; Louis Lambrechts; Veasna Duong; Philippe Dussart; Graham Harold; Cheikh Fall; Oumar Faye; Amadou Alpha Sall; Manfred Weidmann
Journal:  PLoS Negl Trop Dis       Date:  2018-05-29

5.  Rapid detection and differentiation of dengue virus serotypes by NS1 specific reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay in patients presenting to a tertiary care hospital in Hyderabad, India.

Authors:  M Neeraja; V Lakshmi; Vanjari Lavanya; E N Priyanka; M M Parida; P K Dash; Shashi Sharma; P V Lakshmana Rao; Gopal Reddy
Journal:  J Virol Methods       Date:  2014-10-25       Impact factor: 2.014

6.  Dengue fever as a reemerging disease in upper Egypt: Diagnosis, vector surveillance and genetic diversity using RT-LAMP assay.

Authors:  Mona Gaber; Alzahraa Abdelraouf Ahmad; Asmaa M El-Kady; Mohammed Tolba; Yutaka Suzuki; Shereen M Mohammed; Nahed Ahmed Elossily
Journal:  PLoS One       Date:  2022-05-02       Impact factor: 3.752

7.  An intermolecular-split G-quadruplex DNAzyme sensor for dengue virus detection.

Authors:  Jeunice Ida; Akinori Kuzuya; Yee Siew Choong; Theam Soon Lim
Journal:  RSC Adv       Date:  2020-09-07       Impact factor: 4.036

Review 8.  Dengue Detection: Advances in Diagnostic Tools from Conventional Technology to Point of Care.

Authors:  Md Alamgir Kabir; Hussein Zilouchian; Muhammad Awais Younas; Waseem Asghar
Journal:  Biosensors (Basel)       Date:  2021-06-23
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.