Literature DB >> 24599955

Organization of ribosomes and nucleoids in Escherichia coli cells during growth and in quiescence.

Qian Chai1, Bhupender Singh, Kristin Peisker, Nicole Metzendorf, Xueliang Ge, Santanu Dasgupta, Suparna Sanyal.   

Abstract

We have examined the distribution of ribosomes and nucleoids in live Escherichia coli cells under conditions of growth, division, and in quiescence. In exponentially growing cells translating ribosomes are interspersed among and around the nucleoid lobes, appearing as alternative bands under a fluorescence microscope. In contrast, inactive ribosomes either in stationary phase or after treatment with translation inhibitors such as chloramphenicol, tetracycline, and streptomycin gather predominantly at the cell poles and boundaries with concomitant compaction of the nucleoid. However, under all conditions, spatial segregation of the ribosomes and the nucleoids is well maintained. In dividing cells, ribosomes accumulate on both sides of the FtsZ ring at the mid cell. However, the distribution of the ribosomes among the new daughter cells is often unequal. Both the shape of the nucleoid and the pattern of ribosome distribution are also modified when the cells are exposed to rifampicin (transcription inhibitor), nalidixic acid (gyrase inhibitor), or A22 (MreB-cytoskeleton disruptor). Thus we conclude that the intracellular organization of the ribosomes and the nucleoids in bacteria are dynamic and critically dependent on cellular growth processes (replication, transcription, and translation) as well as on the integrity of the MreB cytoskeleton.

Entities:  

Keywords:  Antibiotics; Cell Division; Cytoskeleton; DNA Replication; FtsZ Ring; Nucleoid; Ribosomes; Subcellular Organelles; Transcription; Translation

Mesh:

Substances:

Year:  2014        PMID: 24599955      PMCID: PMC4036271          DOI: 10.1074/jbc.M114.557348

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  53 in total

1.  Dysfunctional MreB inhibits chromosome segregation in Escherichia coli.

Authors:  Thomas Kruse; Jakob Møller-Jensen; Anders Løbner-Olesen; Kenn Gerdes
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

2.  The bacterial cytoskeleton: an intermediate filament-like function in cell shape.

Authors:  Nora Ausmees; Jeffrey R Kuhn; Christine Jacobs-Wagner
Journal:  Cell       Date:  2003-12-12       Impact factor: 41.582

Review 3.  The role of co-transcriptional translation and protein translocation (transertion) in bacterial chromosome segregation.

Authors:  Conrad L Woldringh
Journal:  Mol Microbiol       Date:  2002-07       Impact factor: 3.501

4.  Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication.

Authors:  Patrick H Viollier; Martin Thanbichler; Patrick T McGrath; Lisandra West; Maliwan Meewan; Harley H McAdams; Lucy Shapiro
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

5.  Analysis of cell size and DNA content in exponentially growing and stationary-phase batch cultures of Escherichia coli.

Authors:  T Akerlund; K Nordström; R Bernander
Journal:  J Bacteriol       Date:  1995-12       Impact factor: 3.490

6.  Visualization of bacterial genes in action.

Authors:  O L Miller; B A Hamkalo; C A Thomas
Journal:  Science       Date:  1970-07-24       Impact factor: 47.728

7.  Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription.

Authors:  J Mascarenhas; M H Weber; P L Graumann
Journal:  EMBO Rep       Date:  2001-07-19       Impact factor: 8.807

8.  The distribution of RNA polymerase in Escherichia coli is dynamic and sensitive to environmental cues.

Authors:  Julio E Cabrera; Ding J Jin
Journal:  Mol Microbiol       Date:  2003-12       Impact factor: 3.501

9.  Effect of rifampin on the structure and membrane attachment of the nucleoid of Escherichia coli.

Authors:  P Dworsky; M Schaechter
Journal:  J Bacteriol       Date:  1973-12       Impact factor: 3.490

10.  RNA dynamics in live Escherichia coli cells.

Authors:  Ido Golding; Edward C Cox
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-26       Impact factor: 11.205

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  34 in total

Review 1.  RNA localization in bacteria.

Authors:  Avi-ad Avraam Buskila; Shanmugapriya Kannaiah; Orna Amster-Choder
Journal:  RNA Biol       Date:  2014-10-31       Impact factor: 4.652

2.  Cell Boundary Confinement Sets the Size and Position of the E. coli Chromosome.

Authors:  Fabai Wu; Pinaki Swain; Louis Kuijpers; Xuan Zheng; Kevin Felter; Margot Guurink; Jacopo Solari; Suckjoon Jun; Thomas S Shimizu; Debasish Chaudhuri; Bela Mulder; Cees Dekker
Journal:  Curr Biol       Date:  2019-05-30       Impact factor: 10.834

3.  Time-dependent effects of transcription- and translation-halting drugs on the spatial distributions of the Escherichia coli chromosome and ribosomes.

Authors:  Somenath Bakshi; Heejun Choi; Jagannath Mondal; James C Weisshaar
Journal:  Mol Microbiol       Date:  2014-10-22       Impact factor: 3.501

Review 4.  RNA Localization in Bacteria.

Authors:  Jingyi Fei; Cynthia M Sharma
Journal:  Microbiol Spectr       Date:  2018-09

Review 5.  The physiology of growth arrest: uniting molecular and environmental microbiology.

Authors:  Megan Bergkessel; David W Basta; Dianne K Newman
Journal:  Nat Rev Microbiol       Date:  2016-08-11       Impact factor: 60.633

6.  Robustness of the Process of Nucleoid Exclusion of Protein Aggregates in Escherichia coli.

Authors:  Ramakanth Neeli-Venkata; Antti Martikainen; Abhishekh Gupta; Nadia Gonçalves; Jose Fonseca; Andre S Ribeiro
Journal:  J Bacteriol       Date:  2016-01-04       Impact factor: 3.490

Review 7.  Bacterial metabolic heterogeneity: origins and applications in engineering and infectious disease.

Authors:  Trent D Evans; Fuzhong Zhang
Journal:  Curr Opin Biotechnol       Date:  2020-06-20       Impact factor: 9.740

8.  High-Resolution Mapping of the Escherichia coli Chromosome Reveals Positions of High and Low Transcription.

Authors:  Scott A Scholz; Rucheng Diao; Michael B Wolfe; Elayne M Fivenson; Xiaoxia Nina Lin; Peter L Freddolino
Journal:  Cell Syst       Date:  2019-03-20       Impact factor: 10.304

9.  Near Saturation of Ribosomal L7/L12 Binding Sites with Ternary Complexes in Slowly Growing E. coli.

Authors:  Mainak Mustafi; James C Weisshaar
Journal:  J Mol Biol       Date:  2019-04-30       Impact factor: 5.469

10.  Ribosome biogenesis in replicating cells: Integration of experiment and theory.

Authors:  Tyler M Earnest; John A Cole; Joseph R Peterson; Michael J Hallock; Thomas E Kuhlman; Zaida Luthey-Schulten
Journal:  Biopolymers       Date:  2016-10       Impact factor: 2.505

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