Literature DB >> 24599844

The plastid genomes of flowering plants.

Tracey A Ruhlman1, Robert K Jansen.   

Abstract

The plastid genome (plastome) has proved a valuable source of data for evaluating evolutionary relationships among angiosperms. Through basic and applied approaches, plastid transformation technology offers the potential to understand and improve plant productivity, providing food, fiber, energy and medicines to meet the needs of a burgeoning global population. The growing genomic resources available to both phylogenetic and biotechnological investigations are allowing novel insights and expanding the scope of plastome research to encompass new species. In this chapter we present an overview of some of the seminal and contemporary research that has contributed to our current understanding of plastome evolution and attempt to highlight the relationship between evolutionary mechanisms and tools of plastid genetic engineering.

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Year:  2014        PMID: 24599844     DOI: 10.1007/978-1-62703-995-6_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  35 in total

1.  The complete chloroplast genome of colchicine plants (Colchicum autumnale L. and Gloriosa superba L.) and its application for identifying the genus.

Authors:  Pham Anh Thi Nguyen; Jung Sung Kim; Joo-Hwan Kim
Journal:  Planta       Date:  2015-04-23       Impact factor: 4.116

2.  Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels.

Authors:  Evan S Forsythe; Corrinne E Grover; Emma R Miller; Justin L Conover; Mark A Arick; M Carolina F Chavarro; Soraya C M Leal-Bertioli; Daniel G Peterson; Joel Sharbrough; Jonathan F Wendel; Daniel B Sloan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-19       Impact factor: 12.779

3.  Software Choice and Sequencing Coverage Can Impact Plastid Genome Assembly-A Case Study in the Narrow Endemic Calligonum bakuense.

Authors:  Eka Giorgashvili; Katja Reichel; Calvinna Caswara; Vuqar Kerimov; Thomas Borsch; Michael Gruenstaeudl
Journal:  Front Plant Sci       Date:  2022-07-06       Impact factor: 6.627

4.  Comprehensive genomic analyses with 115 plastomes from algae to seed plants: structure, gene contents, GC contents, and introns.

Authors:  Eun-Chae Kwon; Jong-Hwa Kim; Nam-Soo Kim
Journal:  Genes Genomics       Date:  2020-03-21       Impact factor: 1.839

5.  Coevolution between Nuclear-Encoded DNA Replication, Recombination, and Repair Genes and Plastid Genome Complexity.

Authors:  Jin Zhang; Tracey A Ruhlman; Jamal S M Sabir; John Chris Blazier; Mao-Lun Weng; Seongjun Park; Robert K Jansen
Journal:  Genome Biol Evol       Date:  2016-02-17       Impact factor: 3.416

6.  Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family.

Authors:  Yanxia Sun; Michael J Moore; Nan Lin; Kole F Adelalu; Aiping Meng; Shuguang Jian; Linsen Yang; Jianqiang Li; Hengchang Wang
Journal:  BMC Genomics       Date:  2017-08-09       Impact factor: 3.969

7.  Independent degradation in genes of the plastid ndh gene family in species of the orchid genus Cymbidium (Orchidaceae; Epidendroideae).

Authors:  Hyoung Tae Kim; Mark W Chase
Journal:  PLoS One       Date:  2017-11-15       Impact factor: 3.240

8.  The dynamic evolution of mobile open reading frames in plastomes of Hymenophyllum Sm. and new insight on Hymenophyllum coreanum Nakai.

Authors:  Hyoung Tae Kim; Jung Sung Kim
Journal:  Sci Rep       Date:  2020-07-06       Impact factor: 4.379

9.  Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries.

Authors:  Hyoung Tae Kim; Jung Sung Kim; Michael J Moore; Kurt M Neubig; Norris H Williams; W Mark Whitten; Joo-Hwan Kim
Journal:  PLoS One       Date:  2015-11-11       Impact factor: 3.240

10.  Integral Phylogenomic Approach over Ilex L. Species from Southern South America.

Authors:  Jimena Cascales; Mariana Bracco; Mariana J Garberoglio; Lidia Poggio; Alexandra M Gottlieb
Journal:  Life (Basel)       Date:  2017-11-22
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