Literature DB >> 24599521

Variibacter gotjawalensis gen. nov., sp. nov., isolated from soil of a lava forest.

Kwang Kyu Kim1, Keun Chul Lee, Mi Kyung Eom, Jong-Shik Kim, Dae-Shin Kim, Suk-Hyung Ko, Byung-Hyuk Kim, Jung-Sook Lee.   

Abstract

A novel bacterial strain designated GJW-30(T) was isolated from soil of the lava forest, Gotjawal, located in Aewol, Jeju, Korea. Strain GJW-30(T) was found to be strictly aerobic, Gram-negative and to form pleomorphic, non-motile rods and white colonies on R2A agar. The major fatty acids were identified as C18:1ω7c, C16:0 and C17:0, the predominant isoprenoid quinone as Q-10, the polar lipids as diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, an unidentified aminolipid and an unidentified lipid. The cell-wall sugar pattern of strain GJW-30(T) was found to be composed of glucose, ribose and rhamnose and meso-DAP as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content of strain GJW-30(T) is 62.2 mol%. Phylogenetic analysis, based on 16S rRNA gene sequence similarities, showed that strain GJW-30(T) forms a deep branch within the order Rhizobiales, sharing the highest level of sequence homology with Bradyrhizobium oligotrophicum LMG 10732(T) (93.6 %). On the basis of the phenotypic, chemotaxonomic and phylogenetic characteristics, strain GJW-30(T) is considered to represent a novel genus and species, for which the name Variibacter gotjawalensis gen. nov., sp. nov. (the type strain is GJW-30(T) = KCTC 32391(T) = CECT 8514(T) = LMG 28093(T)) is proposed.

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Year:  2014        PMID: 24599521     DOI: 10.1007/s10482-014-0146-z

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  3 in total

1.  Pyrosequencing analysis of a bacterial community associated with lava-formed soil from the Gotjawal forest in Jeju, Korea.

Authors:  Jong-Shik Kim; Keun Chul Lee; Dae-Shin Kim; Suk-Hyung Ko; Man-Young Jung; Sung-Keun Rhee; Jung-Sook Lee
Journal:  Microbiologyopen       Date:  2015-01-21       Impact factor: 3.139

2.  Microbial community structure and functional potential of lava-formed Gotjawal soils in Jeju, Korea.

Authors:  Jong-Shik Kim; Dae-Shin Kim; Keun Chul Lee; Jung-Sook Lee; Gary M King; Sanghoon Kang
Journal:  PLoS One       Date:  2018-10-12       Impact factor: 3.240

3.  Change of rhizospheric bacterial community of the ancient wild tea along elevational gradients in Ailao mountain, China.

Authors:  Haiyun Zi; Yonglei Jiang; Xiaomao Cheng; Wanting Li; Xiaoxia Huang
Journal:  Sci Rep       Date:  2020-06-08       Impact factor: 4.379

  3 in total

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