Literature DB >> 24599251

Enhancer biology and enhanceropathies.

Edwin Smith1, Ali Shilatifard1.   

Abstract

Enhancers are cis-regulatory elements that enable precise spatiotemporal patterns of gene expression during development and are notable for being able to function at large distances from their target genes. Such regulatory elements often bypass intervening genes and typically comprise binding sites for multiple transcription factors that can also be transcribed by RNA polymerase II (Pol II) to produce noncoding enhancer RNAs (eRNAs). Genome-wide analyses have revealed chromatin signatures of enhancers, such as the enrichment for monomethylation of histone H3 lysine 4 (H3K4me1) and the acetylation or methylation of histone H3 lysine 27 (H3K27). Enhancer signatures have been used to describe the transitions of these regulatory elements from inactive to primed and from activated to decommissioned states during development. New mutations of enhancer sequences and of the protein factors regulating enhancer function in human disease continue to be identified, contributing to a growing class of 'enhanceropathies'.

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Year:  2014        PMID: 24599251     DOI: 10.1038/nsmb.2784

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  149 in total

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Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

2.  Latent enhancers activated by stimulation in differentiated cells.

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Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

3.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

4.  Molecular genetic analysis of the Drosophila trithorax-related gene which encodes a novel SET domain protein.

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Journal:  Mech Dev       Date:  1999-04       Impact factor: 1.882

5.  The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation.

Authors:  Chengqi Lin; Alexander S Garruss; Zhuojuan Luo; Fengli Guo; Ali Shilatifard
Journal:  Cell       Date:  2012-12-27       Impact factor: 41.582

6.  Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4.

Authors:  Hans-Martin Herz; Man Mohan; Alexander S Garruss; Kaiwei Liang; Yoh-Hei Takahashi; Kristen Mickey; Olaf Voets; C Peter Verrijzer; Ali Shilatifard
Journal:  Genes Dev       Date:  2012-11-19       Impact factor: 11.361

7.  Selective inhibition of tumor oncogenes by disruption of super-enhancers.

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Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

Review 8.  On the molecular etiology of Cornelia de Lange syndrome.

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  133 in total

1.  Deregulation of the Ras-Erk Signaling Axis Modulates the Enhancer Landscape.

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Review 2.  Transcriptional Regulation of the Pancreatic Islet: Implications for Islet Function.

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3.  Towards a map of cis-regulatory sequences in the human genome.

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Journal:  Nucleic Acids Res       Date:  2018-06-20       Impact factor: 16.971

Review 4.  MLL3/MLL4/COMPASS Family on Epigenetic Regulation of Enhancer Function and Cancer.

Authors:  Christie C Sze; Ali Shilatifard
Journal:  Cold Spring Harb Perspect Med       Date:  2016-11-01       Impact factor: 6.915

5.  Inhibition of Interleukin 1β (IL-1β) Expression by Anthrax Lethal Toxin (LeTx) Is Reversed by Histone Deacetylase 8 (HDAC8) Inhibition in Murine Macrophages.

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6.  Genetics: Mapping autoimmune disease epigenetics: what's on the horizon?

Authors:  Chrysothemis C Brown; Lucy R Wedderburn
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Review 7.  Eukaryotic enhancers: common features, regulation, and participation in diseases.

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8.  The transcription factor Hey and nuclear lamins specify and maintain cell identity.

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Review 9.  Studying Transcriptional Enhancers: The Founder Fallacy, Validation Creep, and Other Biases.

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Review 10.  Towards quantitative analysis of gene regulation by enhancers.

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Journal:  Epigenomics       Date:  2017-08-11       Impact factor: 4.778

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