Literature DB >> 24595207

Extended-spectrum-beta-lactamases, AmpC beta-lactamases and plasmid mediated quinolone resistance in klebsiella spp. from companion animals in Italy.

Valentina Donati1, Fabiola Feltrin1, Rene S Hendriksen2, Christina Aaby Svendsen2, Gessica Cordaro1, Aurora García-Fernández3, Serena Lorenzetti1, Raniero Lorenzetti1, Antonio Battisti1, Alessia Franco1.   

Abstract

We report the genetic characterization of 15 Klebsiella pneumoniae (KP) and 4 isolates of K. oxytoca (KO) from clinical cases in dogs and cats and showing extended-spectrum cephalosporin (ESC) resistance. Extended spectrum beta-lactamase (ESBL) and AmpC genes, plasmid-mediated quinolone resistance (PMQR) and co-resistances were investigated. Among KP isolates, ST101 clone was predominant (8/15, 53%), followed by ST15 (4/15, 27%). ST11 and ST340, belonging to Clonal Complex (CC)11, were detected in 2012 (3/15, 20%). MLST on KP isolates corresponded well with PFGE results, with 11 different PFGE patterns observed, including two clusters of two (ST340) and four (ST101) indistinguishable isolates, respectively. All isolates harbored at least one ESBL or AmpC gene, all carried on transferable plasmids (IncR, IncFII, IncI1, IncN), and 16/19 were positive for PMQR genes (qnr family or aac(6')-Ib-cr). The most frequent ESBL was CTX-M-15 (11/19, 58%), detected in all KP ST101, in one KP ST15 and in both KP ST340. blaCTX-M-15 was carried on IncR plasmids in all but one KP isolate. All KP ST15 isolates harbored different ESC resistance genes and different plasmids, and presented the non-transferable blaSHV-28 gene, in association with blaCTX-M-15, blaCTX-M-1 (on IncR, or on IncN), blaSHV-2a (on IncR) or blaCMY-2 genes (on IncI1). KO isolates were positive for blaCTX-M-9 gene (on IncHI2), or for the blaSHV-12 and blaDHA-1 genes (on IncL/M). They were all positive for qnr genes, and one also for the aac(6')-Ib-cr gene. All Klebsiella isolates showed multiresistance towards aminoglycosides, sulfonamides, tetracyclines, trimethoprim and amphenicols, mediated by strA/B, aadA2, aadB, ant (2")-Ia, aac(6')-Ib, sul, tet, dfr and cat genes in various combinations. The emergence in pets of multidrug-resistant Klebsiella with ESBL, AmpC and PMQR determinants, poses further and serious challenges in companion animal therapy and raise concerns for possible bi-directional transmission between pets and humans, especially at household level.

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Year:  2014        PMID: 24595207      PMCID: PMC3942433          DOI: 10.1371/journal.pone.0090564

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


Introduction

Klebsiella are bacterial pathogens that can cause a variety of severe infections in humans, mainly due to K. pneumoniae (KP) [1], [2] and to a lesser degree to K. oxytoca (KO) [3], [4]. KP is also a well-known causal agent of mastitis in cattle and bacteraemia in calves, cervicitis and metritis in mares, pneumonia and septicemia in foals, pneumonia, urinary tract infection (UTI) and septicemia in dogs [5], [6], [7]. Increasing antimicrobial resistance, especially towards aminoglycosides, (fluoro)quinolones, third and fourth generation cephalosporins, cephamycins, and carbapenems have been reported in the last decade [8], [9], [10], and poses serious therapeutic problems when treating Klebsiella infections in humans. In veterinary medicine, scarce information is reported on the occurrence of extended spectrum beta-lactamases (ESBLs), AmpC beta-lactamases and plasmid mediated quinolone resistance (PMQR) in Klebsiella isolates from companion animals [11], [12]. The aim of the study was to provide molecular characterization of extended-spectrum cephalosporin (ESC) resistance and PMQR in Klebsiella isolates from clinical cases or lesions in necropsied animals of canine and feline origin in Italy. A further aim was to determine phenotype and genotype of co-resistances, and to provide plasmid identification and genetic relatedness by Multilocus Sequence Typing (MLST) and Pulsed Field Gel Electrophoresis (PFGE) among the isolates, to evaluate potential clustering of ESC, PMQR, and other resistance genes among clones.

Materials and Methods

Origin of ESC-resistant Klebsiella

Between 2006 and 2012, the Istituto Zooprofilattico Sperimentale delle Regioni Lazio e Toscana (IZSLT) investigated samples from 1555 dogs and 429 cats of clinical cases and necropsy specimens with suspicious bacterial infections, submitted by veterinarians practising mainly in central Italy, and some practising in northern Italy. Presumptive positive Klebsiella isolates were identified using the API 20E identification system (bioMérieux, Craponne, France). For species-level identification of isolates with phenotypic inconclusive results 16S rDNA sequencing technique was employed, by means of the MicroSeq Full Gene system (Applied Biosystems, USA) as described previously [13].

Genotypic characterization

Multilocus Sequence Typing on KP isolates was performed as previously described [14], and interpreted according to the KP MLST database (www.pasteur.fr/mlst). In addition, all isolates were genotyped by PFGE using XbaI according to the previously published protocol [15].

Antimicrobial susceptibility testing

Antimicrobial susceptibility testing was performed as minimum inhibitory concentrations (MIC) by micro-broth dilution in 96-well microtitre plates (Trek Diagnostic Systems, Westlake, OH, USA). The following antimicrobials were tested: ampicillin, cefotaxime, ceftazidime, ciprofloxacin, chloramphenicol, florfenicol, gentamicin, kanamycin, nalidixic acid, streptomycin, sulfonamides, tetracycline, and trimethoprim. The results were interpreted according to the European Committee on Antibiotic Susceptibility Testing (EUCAST) epidemiological cut-offs (www.eucast.org) and to Clinical Laboratory Standard Institute [16] or EUCAST clinical breakpoints for those drugs for which epidemiological cut-offs have not been made available (kanamycin, chloramphenicol, sulfamethoxazole, trimethoprim). For streptomycin, a cut-off of 16 mg/L was used, according to EUCAST MIC distributions. Confirmatory test for the detection of ESBLs were performed on isolates resistant to cefotaxime or ceftazidime according to Clinical Laboratory Standard Institute (CLSI) recommendations [16].

Detection of genes encoding beta-lactamase and PMQR

For the confirmed ESBL producing isolates, the encoding genes belonging to the beta-lactamase and PMQR families were further analyzed for the presence of bla CTX-M [17], bla SHV [18], bla TEM [19], bla OXA [20], bla AmpC families [21], as well as for genes of the qnr family, qep-A, and aac(6′)-Ib-cr encoding for PMQR [22], [23], [24], [25], [26]. The isolates were further screened by PCR for genes encoding carbapenemases [27]. Amplicons were sequenced by BigDye Terminator chemistry (Applied Biosystems, Foster City, CA, USA) and migrated with an automated sequencer (ABI Prism 310; Applied Biosystems). Sequence data analysis was performed using CLC DNA workbench software version 5.7.1 (CLC Bio, Aarhus, Denmark) and evaluated against the GenBank nucleotide databases.

Detection of plasmid replicons

Identification of plasmids was performed by PCR-based replicon typing as previously described [28], [29], [30], and using the PBRT kit (Diatheva, Fano, Italy).

Plasmid analysis

Plasmid DNA preparations were performed using the NucleoSpin Plasmid/Plasmid (NoLid) kit (Macherey-Nagel, Düren, Deutschland) and used to transform MAX Efficiency DH5α Competent Cells (Invitrogen, Life Technologies, U.S.A). In order to identify the plasmid carrying the ESBLs and AmpC genes, the selection of the transformants was performed on LB agar plates containing 100 µg/ml ampicillin. Additionally, the isolates were tested according to the manufacturer's instructions using an array hybridization kit for DNA-based detection of the most common resistance genes, and for the integrase gene (intI1) of class 1 integrons of Gram negative bacteria (Alere Technologies GmbH, Jena, Germany) and the results interpreted by the ArrayMate, Alere.

Results

Isolation rates

The samples (n = 1984; dogs and cats) yielded a total 70 (3.53%, 95% CI: 2.72%–4.34%) KP and 23 (1.16%, 95% CI: 0.69%–1.63%) KO among the isolates, respectively. Of these, 15 (21.4%) KP and four (17.4%) KO revealed resistance to ESC and were investigated in this study.

Genetic relatedness

The 15 KP isolates investigated by MLST were assigned to four different Sequence Types (ST): ST11 (n = 1), ST340 (n = 2), ST101 (n = 8), and ST15 (n = 4) (Figure 1). ST11 and its single-locus (tonB) variant (SLV) ST340 (3/15, 20%), both belonging to CC11, were detected in 2012. The separation of the isolates based on MLST corresponded well with PFGE results grouping the same isolates (Figure 1). A total of 11 different PFGE patterns were observed including two clusters of two and four indistinguishable isolates, respectively (Figure 1). The cluster of the two isolates both belonged to ST340 and was related (80% similarity) to a single isolate exhibiting a unique PFGE pattern and belonging to ST11. The other cluster of four indistinguishable isolates was highly related (from 99% to 80% similarity) to additional four isolates within the same PFGE group, all belonging to ST101 (Figure 1). No clustering was observed related to time, animal origin, nor infection, but some to the presence of resistance genes (Table 1). No MLST was assigned to the four KO isolates. However, the four isolates revealed three different PFGE patterns of which one was a cluster of two identical isolates (Figure 2). The three patterns seemed not to be related, indicating a similarity of 45% and 55% to the pattern of the two clustering isolates. Interestingly, the two isolates of the same PFGE pattern were both from dogs and isolated within the same year, but it could be the result of a random effect (Figure 2).
Figure 1

Dendrogram showing the genotypic relatedness of ESC-resistant Klebsiella pneumoniae (KP) isolates from dogs and cats based on XbaI-PFGE fingerprints, and comparison with Multilocus Sequence Typing classification.

Table 1

Sequence Types, plasmid incompatibility groups, and antimicrobial resistance phenotypes and genotypes in ESC-resistant Klebsiella pneumoniae (KP) and Klebsiella oxytoca (KO).

Sequence TypeKeyAntimicrobial Resistance profilePlasmidESBL and AmpC genesPMQR genesOther resistance and Integron genes
152KPAMP,CTX,CFT,NAL,CIP,STR,KAN,CLO,SULFA,TRI,TET IncI1; IncR bla CMY-2, bla SHV-28 aadA2; catA1; dfrA12; sul1; tet(A); intI1
159KPAMP,CTX,CFT,NAL,CIP,STR,KAN,GEN,CLO,SULFA,TRI,TET IncR; IncFIIk bla SHV-2a, bla SHV-28, bla TEM-1 strA/B; catA1; dfrA12; sulI; tet(A); intI1
157KPAMP,CTX,CFT,NAL,CIP,STR,KAN,SULFA,TRI IncR bla CTX-M-15, bla SHV-28, bla TEM-1 aac(6)-Ib-cr strA/B; dfrA14; sulII; intI1
1513KPAMP,CTX,CFT,NAL,CIP,STR,KAN,GEN,CLO,SULFA,TRIIncN; IncFIA; IncFIB; IncR bla CTX-M-1; bla SHV-28 aadA2; strB; catA1; dfrA12; sulI; sulII
10110KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,SULFA,TRI,TET IncR; IncFIIk; IncFII bla CTX-M-15, bla SHV-1, bla TEM-1, bla OXA-1 aac(6′)-Ib-cr aac(6′)-Ib; dfrA17;
1013KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,TRI,TET IncR; IncFIIk bla CTX-M-15, bla SHV-1, bla TEM-1, bla OXA-1 aac(6′)-Ib-cr aac(6′)-Ib; aadA1; dfrA14; tet(D)
1015KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,TRI IncR; IncFIIk bla CTX-M-15, bla SHV-1, bla TEM-1, bla OXA-1 aac(6′)-Ib-cr aac(6′)-Ib; aadA1; dfrA14
1018KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,TRI,TET IncR; IncFIIk bla CTX-M-15, bla SHV-1, bla TEM-1, bla OXA-1 aac(6′)-Ib-cr aac(6′)-Ib; aadA1; dfrA14; tet(D)
1016KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,TRI,TETIncHI2; IncR; IncFIIk bla CTX-M-15, bla SHV-1, bla TEM-1, bla OXA-1 aac(6′)-Ib-cr aac(6′)-Ib; aadA1
1014KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,TRI,TET IncR; IncFIIk bla CTX-M-15, bla SHV-1, bla TEM-1, bla OXA-1 aac(6′)-Ib-cr aac(6′)-Ib; aadA1; dfrA14; tet(D)
10115KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,TRI,TET IncR; IncFIIk bla CTX-M-15, bla SHV-1, bla TEM-1, bla OXA-1 aac(6′)-Ib-cr aadA1; dfrA17; tet(D)
1011KPAMP,CTX,CFT,NAL,CIP,STR,KAN,GEN,CLO,TRI,TETIncHI2; IncR; IncFIIk bla CTX-M-15, bla SHV-1, bla TEM-1, bla OXA-1 aac(6′)-Ib-cr aadA; strB; catA1; dfrA14
34017KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,SULFA,TRI,TETIncHI2; IncR; IncFIIk, IncFII bla CTX-M-15, bla SHV-11, bla TEM-1, bla OXA-1, bla DHA-1 aac(6′)-Ib-cr; qnrB; qnrS1 aadA2; dfrA21; dfrA17; sulI; tet(A); intI1
34018KPAMP,CTX,CFT,NAL,CIP,KAN,GEN,SULFA,TRI,TET IncR; IncFIIk bla CTX-M-15, bla SHV-11, bla TEM-1, bla OXA-1, bla DHA-1 aac(6′)-Ib-cr; qnrB aac(6′)-Ib; aadA4; dfrA17; dfrA19; sulI; tet(A); intI1
1116KPAMP,CTX,CFT,NAL,CIP,SULFA,TRI,TET IncN; IncFIIk bla CTX-M-1, bla SHV-11, bla TEM-1 qnrS1 aadA2; dfr12; dfrA1; sulI; tet(A)
NA3A KOAMP,CTX,CFT,CIP,STR,KAN,GEN,SULFA,TRI,TETIncHI2; IncL/M bla SHV-12, blaDHA-1, bla TEM-1 qnrB4 strA/B; dfrA19; sulI; tet(D); intI1
NA4A KOAMP,CTX,CFT,CIP,STR,KAN,GEN,SULFA,TRI,TETIncHI2; IncL/M bla SHV-12, blaDHA-1, bla TEM-1 qnrB4 strA/B; dfrA19; sulI; tet(D); intI1
NA1A KOAMP,CTX,CIP,STR,SULFA,TRI,TET IncHI2; IncP bla CTX-M-9 qnrA1 aadA2; aadB; sulI
NA6A KOAMP,CTX,CIP,SULFA,TRI,TET IncHI2 bla CTX-M-9 qnrA1; aac(6′)-Ib-cr aadA2; ant2la; sulI; intI1

Legend:

NA: Not Applicable; AMP = Ampicillin; CFT = Ceftazidime; CIP = Ciprofloxacin; CLO = Chloramphenicol; CTX = Cefotaxime; GEN = Gentamicin; KAN = Kanamycin; NAL =  Nalidixic Acid; STR = Streptomycin; SULFA = Sulfamethoxazole; TET = Tetracycline; TRI = Trimethoprim.

Note: When underscored, plasmids and their content of beta-lactamase and PMQR genes where detected in transformant strains.

Figure 2

Dendrogram showing the genotypic relatedness of ESC-resistant Klebsiella oxytoca (KO) isolates from dogs and cats based on XbaI-PFGE fingerprints.

Legend: NA =  Not Applicable.

Dendrogram showing the genotypic relatedness of ESC-resistant Klebsiella oxytoca (KO) isolates from dogs and cats based on XbaI-PFGE fingerprints.

Legend: NA =  Not Applicable. Legend: NA: Not Applicable; AMP = Ampicillin; CFT = Ceftazidime; CIP = Ciprofloxacin; CLO = Chloramphenicol; CTX = Cefotaxime; GEN = Gentamicin; KAN = Kanamycin; NAL =  Nalidixic Acid; STR = Streptomycin; SULFA = Sulfamethoxazole; TET = Tetracycline; TRI = Trimethoprim. Note: When underscored, plasmids and their content of beta-lactamase and PMQR genes where detected in transformant strains. All isolates showed microbiological resistance to third-generation cephalosporins, and also clinical resistance, either when the MIC results were interpreted according to clinical breakpoints set by CLSI [16] or by EUCAST (e. g. MIC cefotaxime > = 4mg/L), except for 9KP (MIC 1 mg/L). The phenotype for PMQR was evident (ciprofloxacin MIC 0.25mg/L, nalidixic acid 8 mg/L) in KO isolates only, because in all KP isolates it was masked by concurrent genetic background conferring MICs of 8 and 128 mg/L, respectively. Moreover, all isolates showed multidrug-resistance towards other classes of antimicrobials, such as aminoglycosides, sulfonamides, tetracyclines, dihydrofolate reductase inhibitors and amphenicols, mediated by strA/B, aadA2, aadB, ant (2")-Ia, aac(6′)-Ib, sul, tet, dfr and cat genes in various combinations, as reported in Table 1.

Genes encoding ESBL-, AmpC-, and PMQR

All Klebsiella isolates investigated showed the presence of at least one ESBL or AmpC gene encoding ESC resistance. Additionally, 16 out of 19 isolates harbored a PMQR gene (qnr family or aac(6′)-Ib-cr, single or in combination). The most frequent ESC gene harbored by KP isolates was bla CTX-M-15 (n = 11, 58%), detected in all eight ST101, in one ST15 and in both two ST340 isolates, respectively. All four ST15 KP isolates carried the bla SHV-28 gene, single or in combination with the ESC resistance genes bla CTX-M-15, bla CTX-M-1, bla CMY-2, or with the bla TEM-1. All ST101 KP isolates harbored the variant of the aac(6′)-Ib-cr gene, encoding for PMQR. Similarly, the ST340 and ST11 KP isolates were the only ESC-resistant KP harboring genes within the qnr family. The ST15, ST101 and ST340 KP isolates presented the bla CTX-M-15 gene, which was mostly associated with the bla TEM-1, bla OXA-1 and aac(6′)-Ib-cr genes, and to the bla SHV-1, or bla SHV-11 or bla SHV-28 (Table 1). Of the four KO isolates, two were positive for bla CTX-M-9 gene, both associated with the PMQR gene qnrA1, with one the two also positive for the aac(6′)-Ib-cr gene. The last two KO isolates exhibited the bla SHV-12, bla TEM-1, bla DHA-1 and qnrB4 genes. All isolates under study were negative for the presence of carbapenemase genes. Plasmids detected from all the strains and classified by the PCR-based replicon typing method, are reported in Table 1. In our study, the bla CTX-M-15 gene was successfully transferred by transformation from several MLST prototypic strains, demonstrating its plasmid localization. All but one transformant strains were positive for plasmids belonging to the IncR incompatibility group, and in the 18KP transconjugant the bla CTX-M-15 gene was co-transferred with the bla DHA-1 gene. Other ST15 KP strains also presented the IncR plasmid carrying different ESBL genes such as bla SHV-2a and bla CTX-M-1. The 2KP ST15 strain harbored a IncI1 plasmid carrying the bla CMY-2 gene, while a IncN plasmid carrying both the bla CTX-M-1 and qnrS1 gene was detected in the ST11 16KP strain. The KO transformants carried the ESBL genes, bla CTX-M-9 and bla SHV-12 in two incompatibility groups, IncHI2 and IncL/M, respectively (Table 1).

Discussion

The paper provides evidence of heterogeneity of determinants conferring ESC resistance in clinical Klebsiella isolates from dogs and cats in Italy. To the best of our knowledge, all the ESC resistant Klebsiella investigated were from sporadic clinical cases, although two clusters of KO (n = 2) and KP ST101 (n = 4) showed 100% similarity. Apparently, isolates were epidemiologically unrelated, with the exception of 6KP and 1KP (both ST101), with a DNA restriction profile showing 80% similarity, isolated from two cases of necropsies requested by the same veterinary practitioner in 2010 and 2011, respectively. We also document the novel finding of the co-existence of the ESBL bla SHV-28 and the AmpC bla CMY-2 gene in one KP ST15 isolate from a cat and the first report of qnrS- and qnrA- and aac(6′)-Ib-cr- PMQR associated with Klebsiella infections in companion animals from Europe. Klebsiella with ESBL phenotype were described in dogs and cats from China [12], although it was mediated in those isolates by the presence of the CTX-M-9 and CTX-M-1 group beta-lactamases, while a CTX-M-15 positive ST15 KP clone was reported from hospital-acquired infections in pets from France [31]. In our study, the ESBL gene bla CTX-M-15 accounts for the majority of CTX-M genes detected in KP, but it was harbored mainly by the predominant KP ST101 lineage. Interestingly, all KP ST15 isolates showed the association of the bla CTX-M-15, bla CTX-M-1, or bla CMY-2 genes with the bla SHV-28 gene, a bla SHV-1 mutant detected for the first time in China in 2002 (GenBank AF538324), and previously reported to encode for an ESBL phenotype [32]. Co-presence of bla CTX-M-15 and bla SHV-28 has been reported for the first time in the human KP ST15 epidemic clone by Nielsen et al., in 2011 [33]. Our transformation experiments did not succeed in transferring any of the bla SHV28 genes from positive KP isolates. The multidrug-resistant CTX-M-15-producing KP isolates are an of important concern in the nosocomial infections and the IncFII-type plasmid is the main vehicle of bla CTX-M-15 transmission in human isolates [34]. However, in our study, this ESBL in KP from pets was mostly carried by IncR plasmids. The association of bla CTX-M-15 -IncR replicons in KP was documented for the first time by Coelho et al. in 2010 [35], in human clinical isolates, and also reported in the KP clone causing hospital-acquired infections in pets in France [31], and in Spain, associated to qnrB4, bla DHA-1 and armA genes. [36] Interestingly, the 17KP transformant only presented the bla CTX-M-15 gene and the qnrS1 gene both located in a IncFII plasmid. In our study, almost all the bla CTX-M-15 – positive isolates were also positive for IncFIIk replicons: although they have been specifically described in KP [30], these plasmids were never transferred in our experiments. Interestingly, in 2012 we have reported for the first time in clinical cases of pets from Italy the clone KP ST11 and its SLV ST340, harboring ESC and qnrS1-PMQR resistance. Among these CC11 isolates, the ST11 harbored IncN plasmid, which has been frequently involved in the transmission of the bla CTX-M-1 gene, a feature suggesting an animal reservoir for this ESBL, since this Inc plasmid types have been demonstrated to be highly prevalent in zoonotic enterobacterial pathogens [29]. The same animal origin reservoir is proposed for the IncI1 plasmids harboring the bla CMY-2 gene found in E. coli avian commensal strains [34]. It is noteworthy that ST11 and ST340 carried transferable ESBL resistance but not resistance to carbapenems. ST(CC)11 and ST15 and ST101 are among human epidemic clones, carrying both ESBLs and carbapenemases, which have been increasingly detected worldwide, in Europe and in Italy in the last years [36], [37], [38], [39], [40]. These infections are worrisome, since the antimicrobial treatment options for these multidrug-resistant strains are very limited. In Italy, during the last years the rapid emergence of the carbapenemase KPC-producing KP, belonging to the ST101, CC11, and predominantly to a single Sequence Type ST258, has become a serious problem in health-care settings [41], [42], [43]. As for CTX-M and SHV-12 ESBLs in Italy, a high occurrence in KP isolated from humans has been demonstrated, being the ST15, ST37, ST147 and ST273 the prevalent clones [44], [45], [46], [47]. In two KO isolates, the ESBL-encoding bla SHV-12 gene co-existed with the AmpC gene bla DHA-1 in accordance with phenotype of resistance to cefotaxime and cefoxitin observed in the ESBL phenotypic confirmatory test. These two isolates also carried the PMQR gene qnrB4. In these two KO transformants the IncL/M plasmid harbored both the bla SHV-12 and the bla DHA-1 genes but not the qnrB4 gene. To our knowledge, this feature has never been described before. The other KO presented the bla CTX-M-9 gene, located in a IncHI2 plasmid as described worldwide but associated to a qnrA1 gene, a feature previously described in Spain in E. coli and KP of human origin [48], [49] and in KO in clinical specimens from Japan [50]. Similarly to what has been observed in other human and canine KP isolates [34], [12], the association of bla CTX-M genes with the the aac(6′)-Ib-cr encoding an aminoglycoside acetyl transferase determining PMQR, was demonstrated in all ST101 and ST340 isolates, but only in one out of four ST15, but these PMQR genes were not located in the same plasmid in our strains. Conversely, PMQR encoded by different qnr genes of the qnrA or qnrB groups were observed in all the KO isolates studied (Table 1). In the case of the qnrA1 gene, the two KO isolates also harbored the ESBL bla CTX-M-9 gene, a feature reported previously in association with bla VIM-1 and IncHI2 plasmids in KO of human origin [51]. Multidrug-resistance in the ESC resistant and PMQR isolates studied is of further concern from a therapeutic perspective, for a possible impact on clinical outcome of affected animals. In many isolates, the demonstration of the integrase intI1, accounts for the presence of resistance gene cassettes with sul, aadA, cat, dfr genes, associated with Class I integrons, similarly to what has been described in KP of human origin [52], [53]. As for streptomycin resistance, MIC>16 mg/L correlated in 100% isolates with the presence of strA/B genes. Fortunately, the absence of carbapenemases offers so far a better scenario for antimicrobial therapy in companion animals, although a possible circulation, within a short time, of these carbapenemase-producing epidemic strains, is of concern also in veterinary medicine. In conclusion, monitoring and characterization of multidrug-resistant Klebsiella in companion animals by means of phenotypic and molecular methods proved to be useful for providing a picture of mechanisms of resistance that may further spread clonally or by horizontal gene transfer, at regional or even at international level. Sharing this kind of information appears essential for building awareness in companion animal therapy, also in view of preventing and controlling the spread of multidrug-resistant strains in veterinary hospital settings. Indeed, the bi-directional exchange between owners and pets of Klebsiella carrying resistance to critically important antimicrobials for human health, raise some concerns also for the possibility of a spill back to humans, especially at household level. The emergence of the PMQR and, above all, the emergence of concurrent transferable cephamycin, oxymino-cephalosporin, and beta-lactamase inhibitor resistance in multidrug-resistant Klebsiella isolates in pets, a recent issue even in human therapy [54], may pose in the next future further and serious therapeutic challenges also in bacterial infections of companion animals.
  51 in total

1.  An outbreak of Klebsiella pneumoniae infection in dogs with severe enteritis and septicemia.

Authors:  D E Roberts; H M McClain; D S Hansen; P Currin; E W Howerth
Journal:  J Vet Diagn Invest       Date:  2000-03       Impact factor: 1.279

2.  Sequence type 101 (ST101) as the predominant carbapenem-non-susceptible Klebsiella pneumoniae clone in an acute general hospital in Italy.

Authors:  Caterina Mammina; Celestino Bonura; Aurora Aleo; Teresa Fasciana; Tamara Brunelli; Giovanna Pesavento; Roberto Degl'Innocenti; Antonino Nastasi
Journal:  Int J Antimicrob Agents       Date:  2012-04-23       Impact factor: 5.283

3.  Analysis of plasmid-mediated multidrug resistance in Escherichia coli and Klebsiella oxytoca isolates from clinical specimens in Japan.

Authors:  Takashi Ode; Ryoichi Saito; Wakako Kumita; Kenya Sato; Shu Okugawa; Kyoji Moriya; Kazuhiko Koike; Noboru Okamura
Journal:  Int J Antimicrob Agents       Date:  2009-06-27       Impact factor: 5.283

4.  Identification of plasmids by PCR-based replicon typing.

Authors:  Alessandra Carattoli; Alessia Bertini; Laura Villa; Vincenzo Falbo; Katie L Hopkins; E John Threlfall
Journal:  J Microbiol Methods       Date:  2005-06-02       Impact factor: 2.363

5.  Spread of plasmids containing the bla(VIM-1) and bla(CTX-M) genes and the qnr determinant in Enterobacter cloacae, Klebsiella pneumoniae and Klebsiella oxytoca isolates.

Authors:  Elisenda Miró; Concha Segura; Ferran Navarro; Lluisa Sorlí; Pere Coll; Juan P Horcajada; Francisco Alvarez-Lerma; Margarita Salvadó
Journal:  J Antimicrob Chemother       Date:  2010-01-20       Impact factor: 5.790

6.  Emergence of KPC-producing Klebsiella pneumoniae in Italy.

Authors:  Carla Fontana; Marco Favaro; Loredana Sarmati; Silvia Natoli; Anna Altieri; Maria C Bossa; Silvia Minelli; Francesca Leonardis; Cartesio Favalli
Journal:  BMC Res Notes       Date:  2010-02-23

7.  The optimization of a rapid pulsed-field gel electrophoresis protocol for the typing of Acinetobacter baumannii, Escherichia coli and Klebsiella spp.

Authors:  Riza Durmaz; Baris Otlu; Fatih Koksal; Salih Hosoglu; Recep Ozturk; Yasemin Ersoy; Elif Aktas; Nafia Canan Gursoy; Ahmet Caliskan
Journal:  Jpn J Infect Dis       Date:  2009-09       Impact factor: 1.362

8.  qnrD, a novel gene conferring transferable quinolone resistance in Salmonella enterica serovar Kentucky and Bovismorbificans strains of human origin.

Authors:  L M Cavaco; H Hasman; S Xia; F M Aarestrup
Journal:  Antimicrob Agents Chemother       Date:  2008-11-24       Impact factor: 5.191

9.  Carbapenemase-producing Enterobacteriaceae in Finland: the first years (2008-11).

Authors:  Monica Österblad; Juha Kirveskari; Antti J Hakanen; Päivi Tissari; Martti Vaara; Jari Jalava
Journal:  J Antimicrob Chemother       Date:  2012-07-31       Impact factor: 5.790

10.  Virulence characteristics of Klebsiella and clinical manifestations of K. pneumoniae bloodstream infections.

Authors:  Victor L Yu; Dennis S Hansen; Wen Chien Ko; Asia Sagnimeni; Keith P Klugman; Anne von Gottberg; Herman Goossens; Marilyn M Wagener; Vicente J Benedi
Journal:  Emerg Infect Dis       Date:  2007-07       Impact factor: 6.883

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  30 in total

1.  Cooccurrence of Multiple AmpC β-Lactamases in Escherichia coli, Klebsiella pneumoniae, and Proteus mirabilis in Tunisia.

Authors:  Thouraya Chérif; Mabrouka Saidani; Dominique Decré; Ilhem Boutiba-Ben Boubaker; Guillaume Arlet
Journal:  Antimicrob Agents Chemother       Date:  2015-10-12       Impact factor: 5.191

2.  Highly Tigecycline-Resistant Klebsiella pneumoniae Sequence Type 11 (ST11) and ST147 Isolates from Companion Animals.

Authors:  Cristina M Ovejero; Jose Antonio Escudero; Daniel Thomas-Lopez; Andreas Hoefer; Gabriel Moyano; Natalia Montero; Carmen Martin-Espada; Bruno Gonzalez-Zorn
Journal:  Antimicrob Agents Chemother       Date:  2017-05-24       Impact factor: 5.191

3.  High prevalence of extended-spectrum β-lactamase, plasmid-mediated AmpC, and carbapenemase genes in pet food.

Authors:  Salome N Seiffert; Alessandra Carattoli; Regula Tinguely; Agnese Lupo; Vincent Perreten; Andrea Endimiani
Journal:  Antimicrob Agents Chemother       Date:  2014-08-04       Impact factor: 5.191

Review 4.  Plasmid-mediated quinolone resistance in Enterobacteriaceae: a systematic review with a focus on Mediterranean countries.

Authors:  B Yanat; J-M Rodríguez-Martínez; A Touati
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2016-11-26       Impact factor: 3.267

5.  Third-generation-cephalosporin-resistant Klebsiella pneumoniae isolates from humans and companion animals in Switzerland: spread of a DHA-producing sequence type 11 clone in a veterinary setting.

Authors:  Nadia Wohlwend; Andrea Endimiani; Thierry Francey; Vincent Perreten
Journal:  Antimicrob Agents Chemother       Date:  2015-03-02       Impact factor: 5.191

6.  Genetic diversity and co-prevalence of ESBLs and PMQR genes among plasmid-mediated AmpC β-lactamase-producing Klebsiella pneumoniae isolates causing urinary tract infection.

Authors:  Yilin Xiong; Cong Zhang; Wenting Gao; Yong Ma; Qingqing Zhang; Yuqiao Han; Shiyu Jiang; Zinan Zhao; Jia Wang; Yang Chen
Journal:  J Antibiot (Tokyo)       Date:  2021-03-04       Impact factor: 2.649

7.  Klebsiella oxytoca Complex: Update on Taxonomy, Antimicrobial Resistance, and Virulence.

Authors:  Jing Yang; Haiyan Long; Ya Hu; Yu Feng; Alan McNally; Zhiyong Zong
Journal:  Clin Microbiol Rev       Date:  2021-12-01       Impact factor: 50.129

8.  Detection of IncN-pST15 one-health plasmid harbouring blaKPC-2 in a hypermucoviscous Klebsiella pneumoniae CG258 isolated from an infected dog, Brazil.

Authors:  Fábio P Sellera; Bruna Fuga; Herrison Fontana; Fernanda Esposito; Brenda Cardoso; Sibele Konno; Carla Berl; Mariana H Cappellanes; Marcia Cortez; Marcelo Ikeda; César M de Souza; Louise Cerdeira; Nilton Lincopan
Journal:  Transbound Emerg Dis       Date:  2021-02-21       Impact factor: 4.521

9.  Genetic Characterization of Carbapenem-Resistant Enterobacteriaceae and the Spread of Carbapenem-Resistant Klebsiella pneumonia ST340 at a University Hospital in Thailand.

Authors:  Thidarat Netikul; Pattarachai Kiratisin
Journal:  PLoS One       Date:  2015-09-25       Impact factor: 3.240

10.  Diversity and Global Distribution of IncL/M Plasmids Enabling Horizontal Dissemination of β-Lactam Resistance Genes among the Enterobacteriaceae.

Authors:  Marcin Adamczuk; Piotr Zaleski; Lukasz Dziewit; Renata Wolinowska; Marta Nieckarz; Pawel Wawrzyniak; Piotr Kieryl; Andrzej Plucienniczak; Dariusz Bartosik
Journal:  Biomed Res Int       Date:  2015-07-08       Impact factor: 3.411

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