| Literature DB >> 24580839 |
Ji-Jie Hu1, Ya-Wei Liu2, Min-Yi He3, Dan Jin1, Hui Zhao1, Bin Yu1.
Abstract
OBJECTIVE: To identify the protein regulation profile of recombinant human bone morphogenetic protein-2 (rhBMP-2)-induced osteogenic differentiation in beagle bone marrow stem cells (BMSCs).Entities:
Year: 2014 PMID: 24580839 PMCID: PMC3974028 DOI: 10.1186/1477-5956-12-13
Source DB: PubMed Journal: Proteome Sci ISSN: 1477-5956 Impact factor: 2.480
Sequences of primers used in real-time quantitative PCR
| GAPDH | NM_001003142.1 | F: 5ʹ-ATCATCAGCAATGCCTCCTG-3ʹ |
| R: 5ʹ-ATGGACTGTGGTCATGAGTC-3ʹ | ||
| LASP1 | XM_859075.2 | F: 5ʹ- GTGCGCTACAAGGAGGAGTT-3ʹ |
| R: 5ʹ- CTCTGGAGTTCGGGTGTGTC-3ʹ | ||
| Ferritin light chain | NM_001024636.1 | F: 5ʹ-AGGCCCTTTTGGATCTTCAT-3ʹ |
| R: 5ʹ-CAGGTGGTCACCCATCTTCT-3ʹ | ||
| Ferritin heavy chain | NM_001003080.1 | F: 5ʹ-CTGGAGCTCTACGCCTCCTA-3ʹ |
| R: 5ʹ-TGGTTCTGCAGCTTCATCAG-3ʹ |
Figure 1rhBMP-2-induced BMSC osteogenic differentiation. (A) Cell morphology of BMSCs without or with rhBMP-2 induction (labeled as control and BMP-2, respectively). The magnification is 100X. (B) Alkaline phosphatase staining was used to determine the status of osteogenic differentiation of BMSCs, without or with treatment with rhBMP-2. The image magnification is 100X.
Figure 2Proteomics analysis of protein expression profiles in rhBMP-2-induced BMSCs. (A) 2D gel electrophoresis maps of BMSCs without or with rhBMP-2 induction (labeled as control and BMP-2, respectively). (B and C) Close-up images of cropped sections of 2-DE maps shown in (A). Protein number 4, LASP1; Number 11 and 12, ferritin light and heavy chains.
The proteins identified by proteomics analysis
| 1 | Eukaryotic translation initiation factor 3 subunit K isoform 1 | gi|57036583 | 95 | 25342.6 | 4.81 | YNPENLATLER | 25.7 | 0.3 |
| ALTNLPHTDFTLCK | ||||||||
| GIDRYNPENLATLER | ||||||||
| CMIDQAHQEERPIR | ||||||||
| 2 | Heat shock protein beta-6 | gi|57038366 | 100 | 17382.1 | 5.95 | HFSPEEIAVK | 21 | <0.1 |
| VVGDHVEVHAR | ||||||||
| HEERPDEHGYIAR | ||||||||
| 3 | Annexin A8 isoform 1 | gi|73953207 | 102 | 36827.5 | 5.53 | VFEEYER | 39 | <0.1 |
| FITILCTR | ||||||||
| NLHSYFAER | ||||||||
| ILVCLLQGSR | ||||||||
| EGVIIEILASR | ||||||||
| GIGTNEQAIIDVLTR | ||||||||
| DLTETLQSELSGKFER | ||||||||
| NLHSYFAERLYYALK | ||||||||
| GSPHFNPEPDAEALYTAMK | ||||||||
| AQFGKDLTETLQSELSGK | ||||||||
| 4 | LIM and SH3 domain protein 1 isoform 2 | gi|73966152 | 89 | 30162.4 | 6.33 | EPAAPVSIPR | 38 | <0.1 |
| QQSELQSQVR | ||||||||
| IPYCNAHYPK | ||||||||
| GFSVVADTPELQR | ||||||||
| LKQQSELQSQVR | ||||||||
| GKGFSVVADTPELQR | ||||||||
| QSFTMVADTPENLR | ||||||||
| TQDQISNIKYHEEFEK | ||||||||
| 5 | Glucose-6-phosphate isomerase | gi|296080693 | 94 | 63147 | 8.42 | VDHQTGPIVWG | 7.5 | <0.1 |
| KTFTTQETIT | ||||||||
| RSGDWKGYTGCETHAMLP YDQ | ||||||||
| 6 | RAD23 homolog B | gi|57094213 | 99 | 43171 | 4.77 | A PTPVPALAPT | 10.6 | <0.1 |
| QAYFACEKNEN | ||||||||
| AAKQEKPAEK | ||||||||
| VVMVTKPKAVS | ||||||||
| 7 | Fibronectin 1 | gi|345797318 | 99 | 262625 | 5.46 | LEPGTEYTI | 3 | <0.1 |
| RARIAGYRLT | ||||||||
| CSTTSNYEQDQ | ||||||||
| STSQTTAPDAP | ||||||||
| YVVGETWEKPYQG | ||||||||
| LSISPSDNVVVLTNLL | ||||||||
| 8 | Poly(rC) binding protein 1 | gi|222352151 | 95 | 37498 | 6.66 | SSSPEVKGYWA | 7 | <0.1 |
| NSSMTNSTAASRPP | ||||||||
| 9 | Signal transducer and activator of transcription 1 | gi|74005006 | 68 | 87335 | 5.74 | FHAVEPYTK | 6 | <0.1 |
| LWYNMLVTE | ||||||||
| RQQSACIGGPPN | ||||||||
| VIDLETTSLPVVV | ||||||||
| 10 | Retinol-binding protein 4 | gi|73998292 | 100 | 30177 | 8.48 | QEELCLAR | 49 | >10 |
| RLPSVFHPGR | ||||||||
| DPNGLPLEAQK | ||||||||
| QRQEELCLAR | ||||||||
| LIVHNGYCDGR | ||||||||
| LIVHNGYCDGRSEPNTL | ||||||||
| LLNLDGTCADSYSFVFSR | ||||||||
| KDPEGLFLQDNIVAEFSVDENGR | ||||||||
| GNDDHWIIDTDYDTYAVQYSCR | ||||||||
| 11 | Ferritin light chain | gi|66864897 | 100 | 20139.2 | 5.66 | MGDHLTNLRR | 73 | 4 |
| ELAEEKREGAER | ||||||||
| DDVALEGVGHFFR | ||||||||
| QNYSTEVEAAVNR | ||||||||
| LATPQAGLGEYLFER | ||||||||
| SLNQALLDLHALGSAR | ||||||||
| ASYTYLSLGFYFDR | ||||||||
| RLATPQAGLGEYLFER | ||||||||
| ADPHLCDFLENHFLDEEVK | ||||||||
| 12 | Ferritin heavy chain | gi|302393573 | 100 | 21408.4 | 5.53 | ELGDHVTNLR | 66 | 3 |
| SVNQSLLELHK | ||||||||
| YFLHQSHEER | ||||||||
| IFLQDIKKPDR | ||||||||
| SIKELGDHVTNLR | ||||||||
| QNYHQDSEAAINR | ||||||||
| SIKELGDHVTNLRK | ||||||||
| YFLHQSHEEREHAEK | ||||||||
| LATDKNDPHLCDFIETHYLNEQVK | ||||||||
| 13 | Annexin A4 | gi|55742853 | 96 | 36075.2 | 5.72 | VLVSLSAGGR | 60 | >10 |
| FLTVLCSR | ||||||||
| NKSAYFAER | ||||||||
| SDTSFMFQR | ||||||||
| DEGNFLDDALMR | ||||||||
| NHLLHVFDEYKR | ||||||||
| NRNHLLHVFDEYK | ||||||||
| SLYSFIKGDTSGDYR | ||||||||
| AEIDMMDIRESFKR | ||||||||
| SLYSFIKGDTSGDYRK | ||||||||
| NRNHLLHVFDEYKR | ||||||||
| DLMDDLKSELSGNFER | ||||||||
| GGTVKPASGFSATEDAQTLR | ||||||||
| VLVSLSAGGRDEGNFLDDALMR | ||||||||
| 14 | Proteasome activator complex subunit 3, isoform 6 | gi|73965646 | 84 | 29601.6 | 5.69 | YPHVEDYR | 45 | 3 |
| LKVDSFRER | ||||||||
| YPHVEDYRR | ||||||||
| IAKYPHVEDYRR | ||||||||
| RLDECEEAFQGTK | ||||||||
| TVESEAASYLDQISR | ||||||||
| ITSEAEDLVANFFPK | ||||||||
| TVTEIDEKEYISLR | ||||||||
| IEDGNNFGVSIQEETVAELR | ||||||||
| 15 | Adenosylhomocysteinase isoform 1 | gi|73991635 | 100 | 48260.4 | 5.98 | RIILLAEGR | 14.8 | 3 |
| FDNLYGCR | ||||||||
| YPQLLSGIR | ||||||||
| VNIKPQVDR | ||||||||
| SKFDNLYGCR | ||||||||
| VAVVAGYGDVGKGCAQALR | ||||||||
| 16 | Histidyl-tRNA synthetase, cytoplasmic, isoform 1 | gi|73949318 | 73 | 57880.3 | 5.44 | IFSIVEQR | 8 | >10 |
| YDLTVPFAR | ||||||||
| DQGGELLSLR | ||||||||
| KVPCVGLSIGVER | ||||||||
| 17 | Solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 | gi|119618005 | 87 | 40,095 | 9.45 | SVVSVLNKE | 10 | 4 |
| DAAPKMYKEEGL | ||||||||
| IFNGFSVTLKEDGVRG | ||||||||
| 18 | ATP-binding cassette, sub-family B (MDR/TAP), member 1 | gi| 51094928 | 101 | 141479 | 9.06 | EGLMPNTL | 6 | 3 |
| LSLEVKKG | ||||||||
| AVKEANAYDFI | ||||||||
| GLQPAFAIIFSKIIG | ||||||||
| LTLVILAISPVLGLS | ||||||||
| AGNLEDLMSNITNRSDIND | ||||||||
| 19 | DEAD (Asp-Glu-Ala-Asp) box helicase 1 | gi| 148666036 | 66 | 82432 | 6.80 | ERLGKNHI | 7 | >4 |
| CLHGDRKPHERKQN | ||||||||
| GCYLDIDKGHVKFSK | ||||||||
| AIGSDGLCCQSREVKE | ||||||||
| 20 | Isocitrate dehydrogenase 1 (NADP+), soluble | gi|119590847 | 99 | 46659 | 6.53 | EVSIETIEA | 11 | 3 |
| SPNGTIRNI | ||||||||
| GTQKVTYLVHNF | ||||||||
| DDMVAQAMKSEGGFI | ||||||||
| 21 | Filamin B, beta | gi| 410336835 | 73 | 278164 | 5.47 | LEFLDRES | 2.5 | 3 |
| EAGEGDVSV | ||||||||
| PHVVKVFFAG | ||||||||
| ECSDNGDGTCS | ||||||||
| ILVKYNDKHIPGS | ||||||||
| KQPAKFTVDTISAG |
Figure 3Peptide fingerprint map obtained using MALDI-TOF mass spectrometry. (A) LASP1. (B) Ferritin light chain. (C) Ferritin heavy chain.
Figure 4Confirmation of RNA and protein expression levels by real-time quantitative PCR and western blotting analysis (n = 3, per treatment type). (A) The expression of LASP1 and ferritin light and heavy chain mRNAs relative to that of GAPDH, the internal control, as detected by real-time PCR. (B) Expression of LASP1 and ferritin light and heavy chains, as assessed by western blotting analysis. The signal corresponding to the protein bands was quantified using densitometric scanning and the relative protein abundance was determined after normalization with the levels of β-actin protein. Data are presented as mean ± SD and compared using the t-test for independent samples. *p <0.05, indicating significant differences between the two samples compared.