Literature DB >> 24576847

Pack, unpack, bend, twist, pull, push: the physical side of gene expression.

Christophe Lavelle1.   

Abstract

Molecular motors such as polymerases produce physical constraints on DNA and chromatin. Recent techniques, in particular single-molecule micromanipulation, provide estimation of the forces and torques at stake. These biophysical approaches have improved our understanding of chromatin behaviour under physiological physical constraints and should, in conjunction with genome wide and in vivo studies, help to build more realistic mechanistic models of transcription in the context of chromatin. Here, we wish to provide a brief overview of our current knowledge in the field, and emphasize at the same time the importance of DNA supercoiling as a major parameter in gene regulation.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Mesh:

Substances:

Year:  2014        PMID: 24576847     DOI: 10.1016/j.gde.2014.01.001

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  21 in total

Review 1.  The dynamic interplay between DNA topoisomerases and DNA topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-11-14

2.  Two-phase dynamics of DNA supercoiling based on DNA polymer physics.

Authors:  Biao Wan; Jin Yu
Journal:  Biophys J       Date:  2022-01-10       Impact factor: 4.033

3.  The Dynamic Interplay Between DNA Topoisomerases and DNA Topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-07-02

4.  E. E. Just and Creativity in Science. The Importance of Diversity.

Authors:  W Malcolm Byrnes
Journal:  J Afr Am Stud (New Brunsw)       Date:  2015-09

5.  Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC).

Authors:  Rodrigo Galindo-Murillo; Daniel R Roe; Thomas E Cheatham
Journal:  Biochim Biophys Acta       Date:  2014-09-16

6.  Properties of gene expression and chromatin structure with mechanically regulated elongation.

Authors:  Stuart A Sevier; Herbert Levine
Journal:  Nucleic Acids Res       Date:  2018-07-06       Impact factor: 16.971

7.  DNA Sequence Is a Major Determinant of Tetrasome Dynamics.

Authors:  Orkide Ordu; Alexandra Lusser; Nynke H Dekker
Journal:  Biophys J       Date:  2019-08-21       Impact factor: 4.033

Review 8.  The role of ATP-dependent machines in regulating genome topology.

Authors:  Glenn Hauk; James M Berger
Journal:  Curr Opin Struct Biol       Date:  2016-01-29       Impact factor: 6.809

9.  Energetics of base flipping at a DNA mismatch site confined at the latch constriction of α-hemolysin.

Authors:  Robert P Johnson; Rukshan T Perera; Aaron M Fleming; Cynthia J Burrows; Henry S White
Journal:  Faraday Discuss       Date:  2016-12-12       Impact factor: 4.008

Review 10.  Phase separation of DNA: From past to present.

Authors:  John T King; Anisha Shakya
Journal:  Biophys J       Date:  2021-02-12       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.