| Literature DB >> 24575085 |
Bradd J Haley1, Tamar Kokashvili2, Ana Tskshvediani2, Nino Janelidze2, Nino Mitaishvili2, Christopher J Grim3, Guillaume Constantin de Magny4, Arlene J Chen1, Elisa Taviani1, Tamar Eliashvili2, Marina Tediashvili2, Chris A Whitehouse5, Rita R Colwell6, Anwar Huq7.
Abstract
Vibrio parahaemolyticus is a leading cause of seafood-related gastroenteritis and is also an autochthonous member of marine and estuarine environments worldwide. One-hundred seventy strains of V. parahaemolyticus were isolated from water and plankton samples collected along the Georgian coast of the Black Sea during 28 months of sample collection. All isolated strains were tested for presence of tlh, trh, and tdh. A subset of strains were serotyped and tested for additional factors and markers of pandemicity. Twenty-six serotypes, five of which are clinically relevant, were identified. Although all 170 isolates were negative for tdh, trh, and the Kanagawa Phenomenon, 7 possessed the GS-PCR sequence and 27 the 850 bp sequence of V. parahaemolyticus pandemic strains. The V. parahaemolyticus population in the Black Sea was estimated to be genomically heterogeneous by rep-PCR and the serodiversity observed did not correlate with rep-PCR genomic diversity. Statistical modeling was used to predict presence of V. parahaemolyticus as a function of water temperature, with strongest concordance observed for Green Cape site samples (Percent of total variance = 70, P < 0.001). Results demonstrate a diverse population of V. parahaemolyticus in the Black Sea, some of which carry pandemic markers, with increased water temperature correlated to an increase in abundance of V. parahaemolyticus.Entities:
Keywords: Black Sea; Vibrio parahaemolyticus; Vibrionaceae; aquatic microbiology; predictive modeling
Year: 2014 PMID: 24575085 PMCID: PMC3918589 DOI: 10.3389/fmicb.2014.00045
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Figure 1Map showing locations of sampling sites along Black Sea.
Figure 2Water temperature in degrees C (black diamonds, Y-axis) and . Water temperature is averaged across all sites for each sampling month and colored bars demonstrate at least 1 positive sample for that fraction across all sites for each sampling month.
Recorded environmental parameters when .
| Water | Min | 3.4 A/3.6 B | 8/7.7 | 6.2/6.3 | 2.1/2 |
| Max | 20.8/20.8 | 28.5/29.7 | 8.6/8.5 | 7.2/7 | |
| Mean | 12.9/12 | 22.8/16.5 | 7.7/7.8 | 4.4/4.3 | |
| Median | 15.7/13 | 24.25/13 | 7.8/7.9 | 4.3/4.6 | |
| Std Dev | 5.0/7.3 | 4.9/7.3 | 0.7/0.6 | 1.2/1.3 | |
| P64 | Min | 5/3.6 | 19.3/7.7 | 6.5/6.2 | 2/2 |
| Max | 17.4/20.8 | 28.5/29.7 | 8.4/8.5 | 6.8/7.2 | |
| Mean | 13.6/12.3 | 25.4/17.3 | 7.9/7.8 | 4.1/4.4 | |
| Median | 16.5/14.2 | 26.6/17 | 8.2/7.9 | 4.2/4.5 | |
| Std Dev | 4.6/4.9 | 2.9/7 | 0.6/0.6 | 1/1.2 | |
| P200 | Min | 3.4/3.6 | 18/7.7 | 6.2/6.5 | 2.1/2 |
| Max | 20.8/20.8 | 29/29.7 | 8.4/8.5 | 7.2/7.2 | |
| Mean | 12.8/12.3 | 24.6/17 | 7.6/7.8 | 4.4/4.3 | |
| Median | 14.9/14 | 25.6/14.2 | 7.6/8 | 4.1/4.4 | |
| Std Dev | 5.4/4.7 | 3/7 | 0.7/0.5 | 1.3/1.2 | |
| All Plankton | Min | 3.4/3.6 | 18/7.7 | 6.2/6.5 | 2/2 |
| Max | 20.8/20.8 | 29/29.7 | 8.4/8.5 | 7.2/7.2 | |
| Mean | 13.2/12.3 | 25/16.2 | 7.7/7.8 | 4.2/4.3 | |
| Median | 16/14.1 | 25.8/13.6 | 7.8/8 | 4.1/4.5 | |
| Std Dev | 5/4.8 | 3/6.8 | 0.7/0.5 | 1.2/1.2 | |
| All Sample Types | Min | 3.4/3.6 | 8/7.7 | 6.2/6.2 | 2/2 |
| Max | 20.8/20.8 | 29/29.7 | 8.6/8.5 | 7.2/7.2 | |
| Mean | 12.7/12 | 22.7/15.3 | 7.7/7.8 | 4.4/4.3 | |
| Median | 15.2/13.2 | 24/12.4 | 7.7/8 | 4.4/4.6 | |
| Std Dev | 5/4.9 | 4.9/6.9 | 0.7/0.5 | 1.2/1.2 | |
A, statistic when V. parahaemolyticus was detected.
B, statistic when V. parahaemolyticus was not detected.
Molecular characteristics of serotyped strains.
| O1:K32 | 1 | 0 | 0 | 0 | 0 | 0 | l | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O1:K58 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 1 (100) |
| O1:KUT | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) |
| O2:K28 | 7 | 0 | 0 | 0 | 0 | 0 | 7 (100) | 7 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O2:KUT | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O3:K5 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O3:K31 | 7 | 0 | 0 | 0 | 0 | 0 | 7 (100) | 7 (100) | 0 | 0 | 0 | 0 | 0 | 1 (14) | 2 (29) |
| O3:K33 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) |
| O3:K51 | 2 | 0 | 0 | 0 | 0 | 0 | 2 (100) | 2 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O3:K65 | 2 | 0 | 0 | 0 | 0 | 0 | 2 (100) | 2 (100) | 0 | 0 | 0 | 0 | 0 | 1 (50) | 0 |
| O3:KUT | 7 | 0 | 0 | 0 | 0 | 0 | 7 (100) | 7 (100) | 0 | 0 | 0 | 0 | 0 | 1 (14) | 2 (29) |
| O4:K12 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O4:K34 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O4:K37 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | |
| O4:KUT | 7 | 0 | 0 | 0 | 0 | 0 | 7 (100) | 7 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 2 (29) |
| O5:K68 | 2 | 0 | 0 | 0 | 0 | 0 | 2 (100) | 2 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 1 (50) |
| O5:KUT | 2 | 0 | 0 | 0 | 0 | 0 | 2 (100) | 2 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 1 (50) |
| O6:KUT | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O8:KUT | 2 | 0 | 0 | 0 | 0 | 0 | 2 (100) | 2 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O10:K61 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O10:K60 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| O10:KUT | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 1 (100) |
| O11:KUT | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 1 (100) |
| OUT:K27 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| OUT:K33 | 2 | 0 | 0 | 0 | 0 | 0 | 2 (100) | 2 (100) | 0 | 0 | 0 | 0 | 0 | 1 (50) | 1 (50) |
| OUT:K52 | 1 | 0 | 0 | 0 | 0 | 0 | 1 (100) | 1 (100) | 0 | 0 | 0 | 0 | 0 | 0 | 1 (100) |
| UT | 24 | 0 | 0 | 0 | 0 | 0 | 24 (100) | 24 (100) | 0 | 0 | 0 | 0 | 0 | 1 (4) | 12 (50) |
| Total | 80 | 0 | 0 | 0 | 0 | 0 | 80 (100) | 80 (100) | 0 | 0 | 0 | 0 | 0 | 7 (9) | 27 (34) |
Number of positive isolates.
Percent of total isolates of that serotype.
Figure 3Dendrogram showing relatedness of . Asterisks identify strains that are GS-PCR-positive. Numbers on branches indicate degree of divergence between isolates.
Results of binary logistic regression analysis between .
| % of Total Variance | 37.33 | 22.01 | 43.18 | 70.08 | 31.23 |
| 8.00E-10 | 0.008 | 0.004 | 0.005 | 0.003 | |
| Coefficient | 0.27 | 0.19 | 0.32 | 0.53 | 0.24 |
| Intercept | −5.51 | −4.09 | −6.79 | −9.36 | −4.99 |
| Deviance | 112.93 | 35.47 | 25.98 | 12.32 | 30.16 |
| 128 | 31 | 31 | 30 | 30 | |
| 129 | 32 | 32 | 31 | 31 | |
| 130 | 33 | 33 | 32 | 32 | |