Literature DB >> 24567952

Profiling of RNA modifications by multiplexed stable isotope labelling.

Stefanie Kellner1, Jennifer Neumann, David Rosenkranz, Svetlana Lebedeva, René F Ketting, Hans Zischler, Dirk Schneider, Mark Helm.   

Abstract

The combination of (15)N/(13)C stable isotope labelling (SIL) and LC-MS/MS revealed a total of 52 modifications in RNA from E. coli and yeast, including 10 previously undescribed modifications. Two modifications, N-ribosylnicotinamide and 2-methylthioadenosine, were newly detected in species hitherto thought not to contain these modifications.

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Year:  2014        PMID： 24567952     DOI： 10.1039/c3cc49114e

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  24 in total

1.  The 5' NAD Cap of RNAIII Modulates Toxin Production in Staphylococcus aureus Isolates.

Authors:  Hector Gabriel Morales-Filloy; Yaqing Zhang; Gabriele Nübel; Shilpa Elizabeth George; Natalya Korn; Christiane Wolz; Andres Jäschke
Journal:  J Bacteriol       Date:  2020-02-25       Impact factor: 3.490

Review 2.  Detecting RNA modifications in the epitranscriptome: predict and validate.

Authors:  Mark Helm; Yuri Motorin
Journal:  Nat Rev Genet       Date:  2017-02-20       Impact factor: 53.242

3.  Absolute and relative quantification of RNA modifications via biosynthetic isotopomers.

Authors:  Stefanie Kellner; Antonia Ochel; Kathrin Thüring; Felix Spenkuch; Jennifer Neumann; Sunny Sharma; Karl-Dieter Entian; Dirk Schneider; Mark Helm
Journal:  Nucleic Acids Res       Date:  2014-08-16       Impact factor: 16.971

4.  Differentiating Positional Isomers of Nucleoside Modifications by Higher-Energy Collisional Dissociation Mass Spectrometry (HCD MS).

Authors:  Manasses Jora; Andrew P Burns; Robert L Ross; Peter A Lobue; Ruoxia Zhao; Cody M Palumbo; Peter A Beal; Balasubrahmanyam Addepalli; Patrick A Limbach
Journal:  J Am Soc Mass Spectrom       Date:  2018-06-12       Impact factor: 3.109

5.  Identification of NAD+ capped mRNAs in Saccharomyces cerevisiae.

Authors:  Robert W Walters; Tyler Matheny; Laura S Mizoue; Bhalchandra S Rao; Denise Muhlrad; Roy Parker
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-28       Impact factor: 11.205

Review 6.  Pseudouridine: still mysterious, but never a fake (uridine)!

Authors:  Felix Spenkuch; Yuri Motorin; Mark Helm
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

7.  A Platform for Discovery and Quantification of Modified Ribonucleosides in RNA: Application to Stress-Induced Reprogramming of tRNA Modifications.

Authors:  Weiling Maggie Cai; Yok Hian Chionh; Fabian Hia; Chen Gu; Stefanie Kellner; Megan E McBee; Chee Sheng Ng; Yan Ling Joy Pang; Erin G Prestwich; Kok Seong Lim; I Ramesh Babu; Thomas J Begley; Peter C Dedon
Journal:  Methods Enzymol       Date:  2015-07-17       Impact factor: 1.600

Review 8.  Mass spectrometry of modified RNAs: recent developments.

Authors:  Collin Wetzel; Patrick A Limbach
Journal:  Analyst       Date:  2015-10-26       Impact factor: 4.616

9.  Dye label interference with RNA modification reveals 5-fluorouridine as non-covalent inhibitor.

Authors:  Felix Spenkuch; Gerald Hinze; Stefanie Kellner; Christoph Kreutz; Ronald Micura; Thomas Basché; Mark Helm
Journal:  Nucleic Acids Res       Date:  2014-10-09       Impact factor: 16.971

10.  Phosphorylation of Elp1 by Hrr25 is required for elongator-dependent tRNA modification in yeast.

Authors:  Wael Abdel-Fattah; Daniel Jablonowski; Rachael Di Santo; Kathrin L Thüring; Viktor Scheidt; Alexander Hammermeister; Sara Ten Have; Mark Helm; Raffael Schaffrath; Michael J R Stark
Journal:  PLoS Genet       Date:  2015-01-08       Impact factor: 5.917
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