Literature DB >> 24565942

The developmental transcriptome of the human brain: implications for neurodevelopmental disorders.

Andrew T N Tebbenkamp1, A Jeremy Willsey, Matthew W State, Nenad Sestan.   

Abstract

PURPOSE OF REVIEW: Recent characterizations of the transcriptome of the developing human brain by several groups have generated comprehensive datasets on coding and noncoding RNAs that will be instrumental for illuminating the underlying biology of complex neurodevelopmental disorders. This review summarizes recent studies successfully utilizing these data to increase our understanding of the molecular mechanisms of pathogenesis. RECENT
FINDINGS: Several approaches have successfully integrated developmental transcriptome data with gene discovery to generate testable hypotheses about when and where in the developing human brain disease-associated genes converge. Specifically, these include the projection neurons in the prefrontal and primary motor--somatosensory cortex during mid-fetal development in autism spectrum disorder and the frontal cortex during fetal development in schizophrenia.
SUMMARY: Developmental transcriptome data is a key to interpreting disease-associated mutations and transcriptional changes. Novel approaches integrating the spatial and temporal dimensions of these data have increased our understanding of when and where disease occurs. Refinement of spatial and temporal properties and expanding these findings to other neurodevelopmental disorders will provide critical insights for understanding disease biology.

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Year:  2014        PMID: 24565942      PMCID: PMC4038354          DOI: 10.1097/WCO.0000000000000069

Source DB:  PubMed          Journal:  Curr Opin Neurol        ISSN: 1350-7540            Impact factor:   5.710


  50 in total

1.  Association analysis of schizophrenia on 18 genes involved in neuronal migration: MDGA1 as a new susceptibility gene.

Authors:  Anna K Kähler; Srdjan Djurovic; Bettina Kulle; Erik G Jönsson; Ingrid Agartz; Håkan Hall; Stein Opjordsmoen; Klaus D Jakobsen; Thomas Hansen; Ingrid Melle; Thomas Werge; Vidar M Steen; Ole A Andreassen
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2008-10-05       Impact factor: 3.568

2.  Investigating gradients of gene expression involved in early human cortical development.

Authors:  Bui K Ip; Ilka Wappler; Heiko Peters; Susan Lindsay; Gavin J Clowry; Nadhim Bayatti
Journal:  J Anat       Date:  2010-10       Impact factor: 2.610

3.  Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.

Authors:  Joseph T Glessner; Kai Wang; Guiqing Cai; Olena Korvatska; Cecilia E Kim; Shawn Wood; Haitao Zhang; Annette Estes; Camille W Brune; Jonathan P Bradfield; Marcin Imielinski; Edward C Frackelton; Jennifer Reichert; Emily L Crawford; Jeffrey Munson; Patrick M A Sleiman; Rosetta Chiavacci; Kiran Annaiah; Kelly Thomas; Cuiping Hou; Wendy Glaberson; James Flory; Frederick Otieno; Maria Garris; Latha Soorya; Lambertus Klei; Joseph Piven; Kacie J Meyer; Evdokia Anagnostou; Takeshi Sakurai; Rachel M Game; Danielle S Rudd; Danielle Zurawiecki; Christopher J McDougle; Lea K Davis; Judith Miller; David J Posey; Shana Michaels; Alexander Kolevzon; Jeremy M Silverman; Raphael Bernier; Susan E Levy; Robert T Schultz; Geraldine Dawson; Thomas Owley; William M McMahon; Thomas H Wassink; John A Sweeney; John I Nurnberger; Hilary Coon; James S Sutcliffe; Nancy J Minshew; Struan F A Grant; Maja Bucan; Edwin H Cook; Joseph D Buxbaum; Bernie Devlin; Gerard D Schellenberg; Hakon Hakonarson
Journal:  Nature       Date:  2009-04-28       Impact factor: 49.962

4.  Neuroscience. The emerging biology of autism spectrum disorders.

Authors:  Matthew W State; Nenad Šestan
Journal:  Science       Date:  2012-09-14       Impact factor: 47.728

5.  Cytogenetic and molecular characterization of A2BP1/FOX1 as a candidate gene for autism.

Authors:  Christa Lese Martin; Jacqueline A Duvall; Yesim Ilkin; Jason S Simon; M Gladys Arreaza; Kristin Wilkes; Ana Alvarez-Retuerto; Amy Whichello; Cynthia M Powell; Kathleen Rao; Edwin Cook; Daniel H Geschwind
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2007-10-05       Impact factor: 3.568

6.  Age-dependent brain gene expression and copy number anomalies in autism suggest distinct pathological processes at young versus mature ages.

Authors:  Maggie L Chow; Tiziano Pramparo; Mary E Winn; Cynthia Carter Barnes; Hai-Ri Li; Lauren Weiss; Jian-Bing Fan; Sarah Murray; Craig April; Haim Belinson; Xiang-Dong Fu; Anthony Wynshaw-Boris; Nicholas J Schork; Eric Courchesne
Journal:  PLoS Genet       Date:  2012-03-22       Impact factor: 5.917

7.  Spatio-temporal transcriptome of the human brain.

Authors:  Hyo Jung Kang; Yuka Imamura Kawasawa; Feng Cheng; Ying Zhu; Xuming Xu; Mingfeng Li; André M M Sousa; Mihovil Pletikos; Kyle A Meyer; Goran Sedmak; Tobias Guennel; Yurae Shin; Matthew B Johnson; Zeljka Krsnik; Simone Mayer; Sofia Fertuzinhos; Sheila Umlauf; Steven N Lisgo; Alexander Vortmeyer; Daniel R Weinberger; Shrikant Mane; Thomas M Hyde; Anita Huttner; Mark Reimers; Joel E Kleinman; Nenad Sestan
Journal:  Nature       Date:  2011-10-26       Impact factor: 49.962

8.  Genes expressed in specific areas of the human fetal cerebral cortex display distinct patterns of evolution.

Authors:  Nelle Lambert; Marie-Alexandra Lambot; Angéline Bilheu; Valérie Albert; Yvon Englert; Frédérick Libert; Jean-Christophe Noel; Christos Sotiriou; Alisha K Holloway; Katherine S Pollard; Vincent Detours; Pierre Vanderhaeghen
Journal:  PLoS One       Date:  2011-03-18       Impact factor: 3.240

9.  Widespread splicing changes in human brain development and aging.

Authors:  Pavel Mazin; Jieyi Xiong; Xiling Liu; Zheng Yan; Xiaoyu Zhang; Mingshuang Li; Liu He; Mehmet Somel; Yuan Yuan; Yi-Ping Phoebe Chen; Na Li; Yuhui Hu; Ning Fu; Zhibin Ning; Rong Zeng; Hongyi Yang; Wei Chen; Mikhail Gelfand; Philipp Khaitovich
Journal:  Mol Syst Biol       Date:  2013       Impact factor: 11.429

10.  Common genetic variants, acting additively, are a major source of risk for autism.

Authors:  Lambertus Klei; Stephan J Sanders; Michael T Murtha; Vanessa Hus; Jennifer K Lowe; A Jeremy Willsey; Daniel Moreno-De-Luca; Timothy W Yu; Eric Fombonne; Daniel Geschwind; Dorothy E Grice; David H Ledbetter; Catherine Lord; Shrikant M Mane; Christa Lese Martin; Donna M Martin; Eric M Morrow; Christopher A Walsh; Nadine M Melhem; Pauline Chaste; James S Sutcliffe; Matthew W State; Edwin H Cook; Kathryn Roeder; Bernie Devlin
Journal:  Mol Autism       Date:  2012-10-15       Impact factor: 7.509

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  57 in total

1.  The parvalbumin/somatostatin ratio is increased in Pten mutant mice and by human PTEN ASD alleles.

Authors:  Daniel Vogt; Kathleen K A Cho; Anthony T Lee; Vikaas S Sohal; John L R Rubenstein
Journal:  Cell Rep       Date:  2015-04-30       Impact factor: 9.423

2.  Schizophrenia and autism-related disorders.

Authors:  Rebecca E Hommer; Susan E Swedo
Journal:  Schizophr Bull       Date:  2015-01-29       Impact factor: 9.306

3.  Investigation of genes important in neurodevelopment disorders in adult human brain.

Authors:  Gilles Maussion; Alpha B Diallo; Carolina O Gigek; Elizabeth S Chen; Liam Crapper; Jean-Francois Théroux; Gary G Chen; Cristina Vasuta; Carl Ernst
Journal:  Hum Genet       Date:  2015-07-21       Impact factor: 4.132

4.  BrainEXP: a database featuring with spatiotemporal expression variations and co-expression organizations in human brains.

Authors:  Chuan Jiao; Pengpeng Yan; Cuihua Xia; Zhaoming Shen; Zexi Tan; Yanyan Tan; Kangli Wang; Yi Jiang; Lingling Huang; Rujia Dai; Yu Wei; Yan Xia; Qingtuan Meng; Yanmei Ouyang; Liu Yi; Fangyuan Duan; Jiacheng Dai; Shunan Zhao; Chunyu Liu; Chao Chen
Journal:  Bioinformatics       Date:  2019-01-01       Impact factor: 6.937

5.  Maternal immune activation impairs cognitive flexibility and alters transcription in frontal cortex.

Authors:  Dionisio A Amodeo; Chi-Yu Lai; Omron Hassan; Eran A Mukamel; M Margarita Behrens; Susan B Powell
Journal:  Neurobiol Dis       Date:  2019-02-02       Impact factor: 5.996

Review 6.  Unraveling the miswired connectome: a developmental perspective.

Authors:  Adriana Di Martino; Damien A Fair; Clare Kelly; Theodore D Satterthwaite; F Xavier Castellanos; Moriah E Thomason; R Cameron Craddock; Beatriz Luna; Bennett L Leventhal; Xi-Nian Zuo; Michael P Milham
Journal:  Neuron       Date:  2014-09-17       Impact factor: 17.173

7.  Down Syndrome Developmental Brain Transcriptome Reveals Defective Oligodendrocyte Differentiation and Myelination.

Authors:  Jose Luis Olmos-Serrano; Hyo Jung Kang; William A Tyler; John C Silbereis; Feng Cheng; Ying Zhu; Mihovil Pletikos; Lucija Jankovic-Rapan; Nathan P Cramer; Zygmunt Galdzicki; Joseph Goodliffe; Alan Peters; Claire Sethares; Ivana Delalle; Jeffrey A Golden; Tarik F Haydar; Nenad Sestan
Journal:  Neuron       Date:  2016-02-25       Impact factor: 17.173

8.  Proceedings of the 2017 annual meeting of the Fetal Alcohol Spectrum Disorders study group.

Authors:  Jeffrey R Wozniak; Anna Y Klintsova; Derek A Hamilton; Sandra M Mooney
Journal:  Alcohol       Date:  2017-11-01       Impact factor: 2.405

Review 9.  Ribosomal biogenesis as an emerging target of neurodevelopmental pathologies.

Authors:  Michal Hetman; Lukasz P Slomnicki
Journal:  J Neurochem       Date:  2018-11-12       Impact factor: 5.372

10.  Bayesian Community Detection in the Space of Group-Level Functional Differences.

Authors:  Archana Venkataraman; Daniel Y-J Yang; Kevin A Pelphrey; James S Duncan
Journal:  IEEE Trans Med Imaging       Date:  2016-03-02       Impact factor: 10.048

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