Literature DB >> 24560144

Multiscale modeling of cell shape from the actin cytoskeleton.

Padmini Rangamani1, Granville Yuguang Xiong2, Ravi Iyengar3.   

Abstract

The actin cytoskeleton is a dynamic structure that constantly undergoes complex reorganization events during many cellular processes. Mathematical models and simulations are powerful tools that can provide insight into the physical mechanisms underlying these processes and make predictions that can be experimentally tested. Representation of the interactions of the actin filaments with the plasma membrane and the movement of the plasma membrane for computation remains a challenge. Here, we provide an overview of the different modeling approaches used to study cytoskeletal dynamics and highlight the differential geometry approach that we have used to implement the interactions between the plasma membrane and the cytoskeleton. Using cell spreading as an example, we demonstrate how this approach is able to successfully capture in simulations, experimentally observed behavior. We provide a perspective on how the differential geometry approach can be used for other biological processes.
© 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Actin cytoskeleton; Brownian ratchet; Cell spreading; Modeling; Motility

Mesh:

Year:  2014        PMID: 24560144      PMCID: PMC4966540          DOI: 10.1016/B978-0-12-397897-4.00002-4

Source DB:  PubMed          Journal:  Prog Mol Biol Transl Sci        ISSN: 1877-1173            Impact factor:   3.622


  68 in total

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Journal:  J Biol Chem       Date:  1999-11-12       Impact factor: 5.157

Review 3.  Ena/VASP proteins: regulators of the actin cytoskeleton and cell migration.

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Journal:  Annu Rev Cell Dev Biol       Date:  2003       Impact factor: 13.827

4.  Force-velocity relation for actin-polymerization-driven motility from Brownian dynamics simulations.

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Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

Review 5.  Regulation of protein activities by phosphoinositide phosphates.

Authors:  Verena Niggli
Journal:  Annu Rev Cell Dev Biol       Date:  2005       Impact factor: 13.827

6.  Dynamics of capping protein and actin assembly in vitro: uncapping barbed ends by polyphosphoinositides.

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Journal:  J Cell Biol       Date:  1996-10       Impact factor: 10.539

7.  Actin dynamics.

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Journal:  J Cell Sci       Date:  2001-01       Impact factor: 5.285

Review 8.  WASP and WAVE family proteins: key molecules for rapid rearrangement of cortical actin filaments and cell movement.

Authors:  T Takenawa; H Miki
Journal:  J Cell Sci       Date:  2001-05       Impact factor: 5.285

9.  Quantification of cell edge velocities and traction forces reveals distinct motility modules during cell spreading.

Authors:  Benjamin J Dubin-Thaler; Jake M Hofman; Yunfei Cai; Harry Xenias; Ingrid Spielman; Anna V Shneidman; Lawrence A David; Hans-Günther Döbereiner; Chris H Wiggins; Michael P Sheetz
Journal:  PLoS One       Date:  2008-11-17       Impact factor: 3.240

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Journal:  J Cell Biol       Date:  1995-11       Impact factor: 10.539

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  5 in total

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Journal:  Exp Biol Med (Maywood)       Date:  2019-08-06

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Authors:  Abhay Ranganathan; Shawn Owiredu; David H Jang; David M Eckmann
Journal:  Mitochondrion       Date:  2020-02-08       Impact factor: 4.160

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Authors:  Manuel Schöchlin; Stephanie E Weissinger; Arnd R Brandes; Markus Herrmann; Peter Möller; Jochen K Lennerz
Journal:  J Pathol Inform       Date:  2014-10-21

5.  SUN1/2 Are Essential for RhoA/ROCK-Regulated Actomyosin Activity in Isolated Vascular Smooth Muscle Cells.

Authors:  Lauren Porter; Rose-Marie Minaisah; Sultan Ahmed; Seema Ali; Rosemary Norton; Qiuping Zhang; Elisa Ferraro; Chris Molenaar; Mark Holt; Susan Cox; Samuel Fountain; Catherine Shanahan; Derek Warren
Journal:  Cells       Date:  2020-01-06       Impact factor: 6.600

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