Literature DB >> 24557910

Nuclease-mediated double-strand break (DSB) enhancement of small fragment homologous recombination (SFHR) gene modification in human-induced pluripotent stem cells (hiPSCs).

R Geoffrey Sargent1, Shingo Suzuki, Dieter C Gruenert.   

Abstract

Recent developments in methods to specifically modify genomic DNA using sequence-specific endonucleases and donor DNA have opened the door to a new therapeutic paradigm for cell and gene therapy of inherited diseases. Sequence-specific endonucleases, in particular transcription activator-like (TAL) effector nucleases (TALENs), have been coupled with polynucleotide small/short DNA fragments (SDFs) to correct the most common mutation in the cystic fibrosis (CF) transmembrane conductance regulator (CFTR) gene, a 3-base-pair deletion at codon 508 (delF508), in induced pluripotent stem (iPS) cells. The studies presented here describe the generation of candidate TALENs and their co-transfection with wild-type (wt) CFTR-SDFs into CF-iPS cells homozygous for the delF508 mutation. Using an allele-specific PCR (AS-PCR)-based cyclic enrichment protocol, clonal populations of corrected CF-iPS cells were isolated and expanded.

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Year:  2014        PMID: 24557910      PMCID: PMC4162661          DOI: 10.1007/978-1-62703-761-7_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  30 in total

1.  Small fragment homologous replacement-mediated modification of genomic beta-globin sequences in human hematopoietic stem/progenitor cells.

Authors:  Kaarin K Goncz; Nicole L Prokopishyn; Alireza Abdolmohammadi; Babak Bedayat; Rosalie Maurisse; Brian R Davis; Dieter C Gruenert
Journal:  Oligonucleotides       Date:  2006

2.  A TALE of two nucleases: gene targeting for the masses?

Authors:  Karl J Clark; Daniel F Voytas; Stephen C Ekker
Journal:  Zebrafish       Date:  2011-09       Impact factor: 1.985

3.  Sequence-specific correction of genomic hypoxanthine-guanine phosphoribosyl transferase mutations in lymphoblasts by small fragment homologous replacement.

Authors:  Babak Bedayat; Alireza Abdolmohamadi; Lin Ye; Rosalie Maurisse; Hooman Parsi; Jennifer Schwarz; Hamid Emamekhoo; Janice A Nicklas; J Patrick O'Neill; Dieter C Gruenert
Journal:  Oligonucleotides       Date:  2010-02

Review 4.  Oligo/polynucleotide-based gene modification: strategies and therapeutic potential.

Authors:  R Geoffrey Sargent; Soya Kim; Dieter C Gruenert
Journal:  Oligonucleotides       Date:  2011-03-21

5.  Repair of site-specific double-strand breaks in a mammalian chromosome by homologous and illegitimate recombination.

Authors:  R G Sargent; M A Brenneman; J H Wilson
Journal:  Mol Cell Biol       Date:  1997-01       Impact factor: 4.272

Review 6.  Cftr gene targeting in mouse embryonic stem cells mediated by Small Fragment Homologous Replacement (SFHR).

Authors:  Federica Sangiuolo; Maria Lucia Scaldaferri; Antonio Filareto; Paola Spitalieri; Lorenzo Guerra; Maria Favia; Rosa Caroppo; Ruggiero Mango; Emanuela Bruscia; Dieter C Gruenert; Valeria Casavola; Massimo De Felici; Giuseppe Novelli
Journal:  Front Biosci       Date:  2008-01-01

7.  Comparative transfection of DNA into primary and transformed mammalian cells from different lineages.

Authors:  Rosalie Maurisse; David De Semir; Hamid Emamekhoo; Babak Bedayat; Alireza Abdolmohammadi; Hooman Parsi; Dieter C Gruenert
Journal:  BMC Biotechnol       Date:  2010-02-08       Impact factor: 2.563

8.  Targeted replacement of normal and mutant CFTR sequences in human airway epithelial cells using DNA fragments.

Authors:  K K Goncz; K Kunzelmann; Z Xu; D C Gruenert
Journal:  Hum Mol Genet       Date:  1998-11       Impact factor: 6.150

9.  Modification of gene expression and increase in alpha1-antitrypsin (alpha1-AT) secretion after homologous recombination in alpha1-AT-deficient monocytes.

Authors:  Gillian L McNab; Ali Ahmad; Dippica Mistry; Robert A Stockley
Journal:  Hum Gene Ther       Date:  2007-11       Impact factor: 5.695

10.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

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  12 in total

Review 1.  Current Progress in Therapeutic Gene Editing for Monogenic Diseases.

Authors:  Versha Prakash; Marc Moore; Rafael J Yáñez-Muñoz
Journal:  Mol Ther       Date:  2016-01-14       Impact factor: 11.454

Review 2.  DNA repair fidelity in stem cell maintenance, health, and disease.

Authors:  Chinnadurai Mani; P Hemachandra Reddy; Komaraiah Palle
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2019-04-04       Impact factor: 5.187

3.  Correction of Airway Stem Cells: Genome Editing Approaches for the Treatment of Cystic Fibrosis.

Authors:  Nicholas E King; Shingo Suzuki; Cristina Barillà; Finn J Hawkins; Scott H Randell; Susan D Reynolds; Barry R Stripp; Brian R Davis
Journal:  Hum Gene Ther       Date:  2020-09-08       Impact factor: 5.695

Review 4.  Human induced pluripotent stem cells for monogenic disease modelling and therapy.

Authors:  Paola Spitalieri; Valentina Rosa Talarico; Michela Murdocca; Giuseppe Novelli; Federica Sangiuolo
Journal:  World J Stem Cells       Date:  2016-04-26       Impact factor: 5.326

Review 5.  On the Corner of Models and Cure: Gene Editing in Cystic Fibrosis.

Authors:  Marjolein Ensinck; Angélique Mottais; Claire Detry; Teresinha Leal; Marianne S Carlon
Journal:  Front Pharmacol       Date:  2021-04-27       Impact factor: 5.810

6.  Targeted correction and restored function of the CFTR gene in cystic fibrosis induced pluripotent stem cells.

Authors:  Ana M Crane; Philipp Kramer; Jacquelin H Bui; Wook Joon Chung; Xuan Shirley Li; Manuel L Gonzalez-Garay; Finn Hawkins; Wei Liao; Daniela Mora; Sangbum Choi; Jianbin Wang; Helena C Sun; David E Paschon; Dmitry Y Guschin; Philip D Gregory; Darrell N Kotton; Michael C Holmes; Eric J Sorscher; Brian R Davis
Journal:  Stem Cell Reports       Date:  2015-03-12       Impact factor: 7.765

7.  Analysis of gene repair tracts from Cas9/gRNA double-stranded breaks in the human CFTR gene.

Authors:  Jennifer A Hollywood; Ciaran M Lee; Martina F Scallan; Patrick T Harrison
Journal:  Sci Rep       Date:  2016-08-25       Impact factor: 4.379

Review 8.  CRISPR-Cas9: a promising tool for gene editing on induced pluripotent stem cells.

Authors:  Eun Ji Kim; Ki Ho Kang; Ji Hyeon Ju
Journal:  Korean J Intern Med       Date:  2017-01-01       Impact factor: 2.884

9.  The Gene Targeting Approach of Small Fragment Homologous Replacement (SFHR) Alters the Expression Patterns of DNA Repair and Cell Cycle Control Genes.

Authors:  Silvia Pierandrei; Andrea Luchetti; Massimo Sanchez; Giuseppe Novelli; Federica Sangiuolo; Marco Lucarelli
Journal:  Mol Ther Nucleic Acids       Date:  2016-04-05       Impact factor: 10.183

10.  TALENs Facilitate Single-step Seamless SDF Correction of F508del CFTR in Airway Epithelial Submucosal Gland Cell-derived CF-iPSCs.

Authors:  Shingo Suzuki; R Geoffrey Sargent; Beate Illek; Horst Fischer; Alaleh Esmaeili-Shandiz; Michael J Yezzi; Albert Lee; Yanu Yang; Soya Kim; Peter Renz; Zhongxia Qi; Jingwei Yu; Marcus O Muench; Ashley I Beyer; Alessander O Guimarães; Lin Ye; Judy Chang; Eli J Fine; Thomas J Cradick; Gang Bao; Meghdad Rahdar; Matthew H Porteus; Tsuyoshi Shuto; Hirofumi Kai; Yuet W Kan; Dieter C Gruenert
Journal:  Mol Ther Nucleic Acids       Date:  2016-01-05       Impact factor: 10.183

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