Literature DB >> 24557625

Expression and bioinformatic analysis of lymphoma-associated novel gene KIAA0372.

Xiangyang Bai1, Duozhuang Tang, Tao Zhu, Lishi Sun, Lingling Yan, Yunping Lu, Jianfeng Zhou, Ding Ma.   

Abstract

The purpose of this study was to explore the differentially expressed genes in lymph-node cells (LNC) of lymphomas and reactive lymph node hyperplasia, and to perform an initial bioinformatic analysis on a novel gene, KIAA0372, which is highly expressed in the LNC of lymphomas. mRNA extracted from LNC of lymphomas and reactive lymph node hyperplasia were respectively marked with biotin and hybridized with Gene Expression Chips, resulting in differentially expressed genes. Initial bioinformatic analysis was then performed on a novel gene named KIAA0372, whose function has not yet been explored. Its structure and genomic location, its product's physical and chemical properties, subcellular localization and functional domains, were also predicted. Further, a systematic evolution analysis was performed on similar proteins from among several species. Using Gene Expression Chips, many differentially expressed genes were uncovered. Efficient bioinformatic analysis has fundamentally determined that KIAA0372 is an extracellular protein which may be involved in TGF-β signaling. Microarray is an efficient and high throughput strategy for detection of differentially expressed genes. And KIAA0372 is thought to be a potential target for tumor research using bioinformatic analysis.

Entities:  

Year:  2007        PMID: 24557625     DOI: 10.1007/s11684-007-0018-2

Source DB:  PubMed          Journal:  Front Med China        ISSN: 1673-7342


  23 in total

1.  A greedy algorithm for aligning DNA sequences.

Authors:  Z Zhang; S Schwartz; L Wagner; W Miller
Journal:  J Comput Biol       Date:  2000 Feb-Apr       Impact factor: 1.479

Review 2.  TPR proteins: the versatile helix.

Authors:  Luca D D'Andrea; Lynne Regan
Journal:  Trends Biochem Sci       Date:  2003-12       Impact factor: 13.807

Review 3.  Mechanisms of TGF-beta signaling from cell membrane to the nucleus.

Authors:  Yigong Shi; Joan Massagué
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

4.  Improved prediction of signal peptides: SignalP 3.0.

Authors:  Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne; Søren Brunak
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

Review 5.  Tetratricopeptide repeat cochaperones in steroid receptor complexes.

Authors:  David F Smith
Journal:  Cell Stress Chaperones       Date:  2004       Impact factor: 3.667

Review 6.  Molecular biology of lymphoma in the microarray era.

Authors:  Alberto Catalano; Harry Iland
Journal:  Pathology       Date:  2005-12       Impact factor: 5.306

7.  Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro.

Authors:  T Nagase; K Ishikawa; D Nakajima; M Ohira; N Seki; N Miyajima; A Tanaka; H Kotani; N Nomura; O Ohara
Journal:  DNA Res       Date:  1997-04-28       Impact factor: 4.458

8.  Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Authors:  Robert L Strausberg; Elise A Feingold; Lynette H Grouse; Jeffery G Derge; Richard D Klausner; Francis S Collins; Lukas Wagner; Carolyn M Shenmen; Gregory D Schuler; Stephen F Altschul; Barry Zeeberg; Kenneth H Buetow; Carl F Schaefer; Narayan K Bhat; Ralph F Hopkins; Heather Jordan; Troy Moore; Steve I Max; Jun Wang; Florence Hsieh; Luda Diatchenko; Kate Marusina; Andrew A Farmer; Gerald M Rubin; Ling Hong; Mark Stapleton; M Bento Soares; Maria F Bonaldo; Tom L Casavant; Todd E Scheetz; Michael J Brownstein; Ted B Usdin; Shiraki Toshiyuki; Piero Carninci; Christa Prange; Sam S Raha; Naomi A Loquellano; Garrick J Peters; Rick D Abramson; Sara J Mullahy; Stephanie A Bosak; Paul J McEwan; Kevin J McKernan; Joel A Malek; Preethi H Gunaratne; Stephen Richards; Kim C Worley; Sarah Hale; Angela M Garcia; Laura J Gay; Stephen W Hulyk; Debbie K Villalon; Donna M Muzny; Erica J Sodergren; Xiuhua Lu; Richard A Gibbs; Jessica Fahey; Erin Helton; Mark Ketteman; Anuradha Madan; Stephanie Rodrigues; Amy Sanchez; Michelle Whiting; Anup Madan; Alice C Young; Yuriy Shevchenko; Gerard G Bouffard; Robert W Blakesley; Jeffrey W Touchman; Eric D Green; Mark C Dickson; Alex C Rodriguez; Jane Grimwood; Jeremy Schmutz; Richard M Myers; Yaron S N Butterfield; Martin I Krzywinski; Ursula Skalska; Duane E Smailus; Angelique Schnerch; Jacqueline E Schein; Steven J M Jones; Marco A Marra
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

Review 9.  Crosstalk mechanisms between the mitogen-activated protein kinase pathways and Smad signaling downstream of TGF-beta: implications for carcinogenesis.

Authors:  Delphine Javelaud; Alain Mauviel
Journal:  Oncogene       Date:  2005-08-29       Impact factor: 9.867

10.  Functional proteomics mapping of a human signaling pathway.

Authors:  Frédéric Colland; Xavier Jacq; Virginie Trouplin; Christelle Mougin; Caroline Groizeleau; Alexandre Hamburger; Alain Meil; Jérôme Wojcik; Pierre Legrain; Jean-Michel Gauthier
Journal:  Genome Res       Date:  2004-07       Impact factor: 9.043

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  1 in total

1.  Mitochondria-focused gene expression profile reveals common pathways and CPT1B dysregulation in both rodent stress model and human subjects with PTSD.

Authors:  L Zhang; H Li; X Hu; D M Benedek; C S Fullerton; R D Forsten; J A Naifeh; X Li; H Wu; K N Benevides; T Le; S Smerin; D W Russell; R J Ursano
Journal:  Transl Psychiatry       Date:  2015-06-16       Impact factor: 6.222

  1 in total

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