| Literature DB >> 24556956 |
Zhen-Zhen Shang1, Xin Li2, Hui-Qiang Sun3, Guo-Ning Xiao1, Cun-Wei Wang1, Qi Gong1.
Abstract
Oestrogen is essential for maintaining bone mass, and it has been demonstrated to induce osteoblast proliferation and bone formation. In this study, complementary DNA (cDNA) microarrays were used to identify and study the expression of novel genes that may be involved in MC3T3-E1 cells' response to 17-β estradiol. MC3T3-E1 cells were inoculated in minimum essential media alpha (α-MEM) cell culture supplemented with 17-β estradiol at different concentrations and for different time periods. MC3T3-E1 cells treated with 10⁻⁸ mol⋅L⁻¹ 17-β estradiol for 5 days exhibited the highest proliferation and alkaline phosphatase (ALP) activity; thus, this group was chosen for microarray analysis. The harvested RNA was used for microarray hybridisation and subsequent real-time reverse transcription polymerase chain reaction (RT-PCR) to validate the expression levels for selected genes. The microarray results were analysed using both functional and pathway analysis. In this study, microarray analysis detected 5403 differentially expressed genes, of which 1996 genes were upregulated and 3407 genes were downregulated, 1553 different functional classifications were identified by gene ontology (GO) analysis and 53 different pathways were involved based on pathway analysis. Among the differentially expressed genes, a portion not previously reported to be associated with the osteoblast response to oestrogen was identified. These findings clearly demonstrate that the expression of genes related to osteoblast proliferation, cell differentiation, collagens and transforming growth factor beta (TGF-β)-related cytokines increases, while the expression of genes related to apoptosis and osteoclast differentiation decreases, following the exposure of MC3T3-E1 cells to α-MEM supplemented with 17-β estradiol. Microarray analysis with functional gene classification is critical for a complete understanding of complementary intracellular processes. This microarray analysis provides large-scale gene expression data that require further confirmatory studies.Entities:
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Year: 2014 PMID: 24556956 PMCID: PMC4170150 DOI: 10.1038/ijos.2014.2
Source DB: PubMed Journal: Int J Oral Sci ISSN: 1674-2818 Impact factor: 6.344
Sequences of primers used in quantitative real-time RT-PCR
| Gene symbol | Encoded protein | Forward primer (5′–3′) | Reverse primer (5′–3′) |
|---|---|---|---|
| Glyceraldehyde-3-phosphate dehydrogenase | GTTGTCTCCTGCGACTTCA | GCCCCTCCTGTTATTATGG | |
| Lymphoid enhancer binding factor 1 | CGGCGTTGGACAGATCAC | GGGTAGGGTTGCCTGAATC | |
| van Gogh-like 2 | CGGGCTATTCCTACAAGTCG | CCGTGACCACCGTTGTTG | |
| Ras guanine-releasing protein 1 | AACCACTTACCTGAAGCCCAC | TCTTGCACTCGAACACCACC |
RT-PCR, reverse transcription polymerase chain reaction.
Figure 1Graph of MTT results for each group at different oestrogen concentrations and treatment periods (Mean±standard deviation, The MTT levels of the control group and the experimental groups at different oestrogen concentrations (10−10, 10−9, 10−8, 10−7 mol⋅L−1 17-β estradiol) and different durations. Error bars denote standard deviation. *P<0.05, compared with the control group; aP<0.05 compared with the other experimental groups of the same duration, but different oestrogen concentrations. MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide.
ALP results for each group at different oestrogen concentrations and treatment periods /(U⋅g−1)
| Time | ×10−10 mol⋅L−1 | ×10−9 mol⋅L−1 | ×10−8 mol⋅L−1 | ×10−7 mol⋅L−1 | Control |
|---|---|---|---|---|---|
| Day 3 | 0.013 1±0.00 6 | 0.014 8±0.00 6 | 0.016 6±0.00 4 | 0.015 6±0.00 3 | 0.012 9±0.00 4 |
| Day 5 | 0.104 5±0.01 5 | 0.162 8±0.01 1* | 0.276 5±0.01 1* | 0.227 5±0.01 1* | 0.086 2±0.00 6 |
| Day 7 | 0.030 7±0.00 8* | 0.033 1±0.00 8* | 0.033 7±0.00 6* | 0.022 1±0.00 4* | 0.026 7±0.00 1 |
ALP, alkaline phosphatase; s.d., standard deviation.
Mean±standard deviation, n=15.
*P<0.05 compared with the control group.
P<0.05 compared with the experimental groups of the same duration, but different oestrogen concentrations.
Changes in gene expression in the oestrogen-treated group compared with the control group
| GenBank accession ID | Gene product | Gene symbol | FC absolute | |
|---|---|---|---|---|
| Cell proliferation | ||||
| 14184 | Fibroblast growth factor receptor 3 | 16.611 1 | 0.000 022 67 | |
| Cell differentiation | ||||
| 16779 | Laminin beta 2 | 3.945 2 | 0.019 6 | |
| ECM–receptor interaction | ||||
| 12814 | Collagen type XI, alpha1 | 2.002 4 | 0.006 8 | |
| 1280 | Collagen type II, alpha1 | 3.985 9 | 0.024 1 | |
| 12826 | Collagen type IV, alpha1 | 2.755 4 | 0.003 5 | |
| 12832 | Collagen type V, alpha2 | 6.640 1 | 0.012 2 | |
| Gap junction | ||||
| 432530 | Adenylate cyclase 1 | 2.200 4 | 0.012 9 | |
| Wnt signalling pathway | ||||
| 93840 | van Gogh-like 2 | 15.860 0 | 0.001 8 | |
| TGF-β signalling pathway | ||||
| 12162 | Bone morphogenetic protein7 | 7.647 3 | 0.036 4 | |
| Osteoclast differentiation | ||||
| 20846 | Signal transducer and activator of transcription 1 | 2.432 0 | 0.000 4 | |
| Apoptosis | ||||
| 26420 | Mitogen-activated protein kinase 9 | 8.415 0 | 0.000 1 | |
| MAPK signalling pathway | ||||
| 19419 | RAS guanyl releasing protein 1 | 30.970 0 | 0.000 9 | |
| Wnt signalling pathway | ||||
| 56637 | Glycogen synthase kinase 3 beta | 11.830 0 | 0.000 8 | |
| Matrix metallopeptidases | ||||
| 17390 | Matrix metallopeptidase-2 | 2.455 8 | 0.031 9 | |
| 17387 | Matrix metallopeptidase-14 | 3.449 5 | 0.009 8 |
ECM, extracellular cell matrix; MAPK, mitogen-activated protein kinase; TGF-β, transforming growth factor beta.
Principal biological processes based on GO analysis
| GO term | Gene symbols | Fold enrichment | Regulation | |
|---|---|---|---|---|
| Cell differentiation | 2.624 9 | 7.963 2×10−51 | Up | |
| Cell proliferation | 2.506 2 | 3.671 3×10−29 | Up | |
| Intracellular signal transduction | 2.478 8 | 3.202 6×10−28 | Up | |
| Cell communication | 2.441 8 | 1.833 2×10−23 | Up | |
| Regulation of gene expression | 1.658 1 | 3.964 3×10−14 | Up | |
| Response to hormone stimulus | 3.226 8 | 2.465 3×10−6 | Up | |
| Programmed cell death | 2.024 6 | 2.485 6×10−23 | Down | |
| Apoptosis | 2.029 6 | 3.020 9×10−23 | Down | |
| Iκβ kinase/NF-κβ cascade | 2.001 2 | 1.238 4×10−6 | Down |
GO, gene ontology.
Pathway analysis of differentially expressed genes
| Pathways | Genes | Fisher | Regulation |
|---|---|---|---|
| Cell adhesion molecules | 5.341×10−7 | Up | |
| Wnt signalling pathway | 1.567×10−7 | Up | |
| Focal adhesion | 4.703×10−5 | Up | |
| ECM–receptor interaction | 6.074×10−7 | Up | |
| Calcium signalling pathway | 0.001 1 | Up | |
| Gap junction | 0.004 2 | Up | |
| MAPK signalling pathway | 0.007 3 | Up | |
| Osteoclast differentiation | 2.021×10−5 | Down | |
| Wnt signalling pathway | 0.018 1 | Down | |
| MAPK signalling pathway | 0.038 5 | Down | |
| Adherens junction | 0.047 1 | Down | |
| Cell cycle | 0.011 1 | Down |
ECM, extracellular cell matrix; MAPK, mitogen-activated protein kinase.
Results of RT-PCR analysis of selected differentially expressed genes
| GenBank accession ID | Gene name | Gene symbol | Fold change | |||
|---|---|---|---|---|---|---|
| Gene chip | RT-PCR | Gene chip | RT-PCR | |||
| 16842 | Lymphoid enhancer factor1 | −11.77* | −2.510 | 0.002 6 | 0.001 6 | |
| 93840 | van Gogh-like 2 | 15.86* | 10.50 | 0.000 6 | 0.008 9 | |
| 19419 | Ras guanyl releasing protein 1 | −30.97* | −35.85 | 0.000 9 | 0.000 2 | |
RT-PCR, reverse transcription polymerase chain reaction.
* P<0.05.
‘−' stands for downregulated (the oestrogen-treated group relative to the control group).