Literature DB >> 24556788

Preparation of the planarian Schmidtea mediterranea for high-resolution histology and transmission electron microscopy.

John L Brubacher1, Ana P Vieira2, Phillip A Newmark2.   

Abstract

The flatworm Schmidtea mediterranea is an emerging model species in fields such as stem cell biology, regeneration and evolutionary biology. Excellent molecular tools have been developed for S. mediterranea, but ultrastructural techniques have received far less attention. Processing specimens for histology and transmission electron microscopy (TEM) is notoriously idiosyncratic for particular species or specimen types. Unfortunately, however, most methods for S. mediterranea described in the literature lack numerous essential details, and those few that do provide them rely on specialized equipment that may not be readily available. Here we present an optimized protocol for ultrastructural preparation of S. mediterranea. The protocol can be completed in 6 d, much of which is 'hands-off' time. To aid with troubleshooting, we also illustrate the major effects of seemingly minor variations in fixative, buffer concentration and dehydration steps. This procedure will be useful for all planarian researchers, particularly those with relatively little experience in tissue processing.

Entities:  

Mesh:

Year:  2014        PMID: 24556788      PMCID: PMC4097191          DOI: 10.1038/nprot.2014.041

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  38 in total

1.  Electron microscopy of flatworms standard and cryo-preparation methods.

Authors:  Willi Salvenmoser; Bernhard Egger; Johannes G Achatz; Peter Ladurner; Michael W Hess
Journal:  Methods Cell Biol       Date:  2010       Impact factor: 1.441

2.  PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells.

Authors:  Labib Rouhana; Ana P Vieira; Rachel H Roberts-Galbraith; Phillip A Newmark
Journal:  Development       Date:  2012-02-08       Impact factor: 6.868

3.  An immunofluorescence method for postembedded tissue in the acrylic resin Technovit 9100 New using fluorescein isothiocyanate secondary detection.

Authors:  Sim K Singhrao; Carsten T Müller; Sophie J Gilbert; Victor C Duance; Charles W Archer
Journal:  Microsc Res Tech       Date:  2009-07       Impact factor: 2.769

4.  Mechanical fixation techniques for processing and orienting delicate samples, such as the root of Arabidopsis thaliana, for light or electron microscopy.

Authors:  Shuang Wu; Tobias I Baskin; Kimberly L Gallagher
Journal:  Nat Protoc       Date:  2012-05-17       Impact factor: 13.491

Review 5.  The future is cold: cryo-preparation methods for transmission electron microscopy of cells.

Authors:  Ilse Hurbain; Martin Sachse
Journal:  Biol Cell       Date:  2011-09       Impact factor: 4.458

6.  Evolution and development of polarized germ cell cysts: new insights from a polychaete worm, Ophryotrocha labronica.

Authors:  John L Brubacher; Erwin Huebner
Journal:  Dev Biol       Date:  2011-06-25       Impact factor: 3.582

7.  The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling.

Authors:  Jochen C Rink; Hanh Thi-Kim Vu; Alejandro Sánchez Alvarado
Journal:  Development       Date:  2011-09       Impact factor: 6.868

8.  De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.

Authors:  Catherine Adamidi; Yongbo Wang; Dominic Gruen; Guido Mastrobuoni; Xintian You; Dominic Tolle; Matthias Dodt; Sebastian D Mackowiak; Andreas Gogol-Doering; Pinar Oenal; Agnieszka Rybak; Eric Ross; Alejandro Sánchez Alvarado; Stefan Kempa; Christoph Dieterich; Nikolaus Rajewsky; Wei Chen
Journal:  Genome Res       Date:  2011-05-02       Impact factor: 9.043

9.  Development of polarized female germline cysts in the polychaete, Ophryotrocha labronica.

Authors:  John L Brubacher; Erwin Huebner
Journal:  J Morphol       Date:  2009-04       Impact factor: 1.804

10.  An RNAi screen reveals intestinal regulators of branching morphogenesis, differentiation, and stem cell proliferation in planarians.

Authors:  David J Forsthoefel; Noëlle P James; David J Escobar; Joel M Stary; Ana P Vieira; Forrest A Waters; Phillip A Newmark
Journal:  Dev Cell       Date:  2012-10-16       Impact factor: 12.270

View more
  10 in total

1.  Light-Induced Length Shrinkage of Rod Photoreceptor Outer Segments.

Authors:  Yiming Lu; Jacopo Benedetti; Xincheng Yao
Journal:  Transl Vis Sci Technol       Date:  2018-12-21       Impact factor: 3.283

2.  Tryptophan hydroxylase Is Required for Eye Melanogenesis in the Planarian Schmidtea mediterranea.

Authors:  Bramwell G Lambrus; Olivier Cochet-Escartin; Jiarong Gao; Phillip A Newmark; Eva-Maria S Collins; James J Collins
Journal:  PLoS One       Date:  2015-05-27       Impact factor: 3.240

3.  Generation of cell type-specific monoclonal antibodies for the planarian and optimization of sample processing for immunolabeling.

Authors:  David J Forsthoefel; Forrest A Waters; Phillip A Newmark
Journal:  BMC Dev Biol       Date:  2014-12-21       Impact factor: 1.978

4.  Forkhead containing transcription factor Albino controls tetrapyrrole-based body pigmentation in planarian.

Authors:  Chen Wang; Xiao-Shuai Han; Fang-Fang Li; Shuang Huang; Yong-Wen Qin; Xian-Xian Zhao; Qing Jing
Journal:  Cell Discov       Date:  2016-08-02       Impact factor: 10.849

5.  Cytoplasmic poly (A)-binding protein critically regulates epidermal maintenance and turnover in the planarian Schmidtea mediterranea.

Authors:  Dhiru Bansal; Jahnavi Kulkarni; Kavana Nadahalli; Vairavan Lakshmanan; Srikar Krishna; Vidyanand Sasidharan; Jini Geo; Shilpa Dilipkumar; Renu Pasricha; Akash Gulyani; Srikala Raghavan; Dasaradhi Palakodeti
Journal:  Development       Date:  2017-08-14       Impact factor: 6.868

6.  Secondary Structure-Dependent Physicochemical Interaction of Oligonucleotides with Gold Nanorod and Photothermal Effect for Future Applications: A New Insight.

Authors:  Upasana Das; Aditi Sahoo; Subhash Haldar; Sudin Bhattacharya; Syam Sundar Mandal; William H Gmeiner; Supratim Ghosh
Journal:  ACS Omega       Date:  2018-10-30

7.  Identification of Autophagy-Related Gene 7 and Autophagic Cell Death in the Planarian Dugesia japonica.

Authors:  Kexue Ma; Yumei Zhang; Gege Song; Meng Wu; Guangwen Chen
Journal:  Front Physiol       Date:  2018-09-04       Impact factor: 4.566

8.  Mass Spectrometry Imaging and Identification of Peptides Associated with Cephalic Ganglia Regeneration in Schmidtea mediterranea.

Authors:  Ta-Hsuan Ong; Elena V Romanova; Rachel H Roberts-Galbraith; Ning Yang; Tyler A Zimmerman; James J Collins; Ji Eun Lee; Neil L Kelleher; Phillip A Newmark; Jonathan V Sweedler
Journal:  J Biol Chem       Date:  2016-02-16       Impact factor: 5.157

9.  A functional genomics screen in planarians reveals regulators of whole-brain regeneration.

Authors:  Rachel H Roberts-Galbraith; John L Brubacher; Phillip A Newmark
Journal:  Elife       Date:  2016-09-09       Impact factor: 8.140

10.  A planarian nidovirus expands the limits of RNA genome size.

Authors:  Amir Saberi; Anastasia A Gulyaeva; John L Brubacher; Phillip A Newmark; Alexander E Gorbalenya
Journal:  PLoS Pathog       Date:  2018-11-01       Impact factor: 6.823

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.