Literature DB >> 24550513

Bacterial tubulin TubZ-Bt transitions between a two-stranded intermediate and a four-stranded filament upon GTP hydrolysis.

Elizabeth A Montabana1, David A Agard.   

Abstract

Cytoskeletal filaments form diverse superstructures that are highly adapted for specific functions. The recently discovered TubZ subfamily of tubulins is involved in type III plasmid partitioning systems, facilitating faithful segregation of low copy-number plasmids during bacterial cell division. One such protein, TubZ-Bt, is found on the large pBtoxis plasmid in Bacillus thuringiensis, and interacts via its extended C terminus with a DNA adaptor protein TubR. Here, we use cryo-electron microscopy to determine the structure of TubZ-Bt filaments and light scattering to explore their mechanism of polymerization. Surprisingly, we find that the helical filament architecture is remarkably sensitive to nucleotide state, changing from two-stranded to four-stranded depending on the ability of TubZ-Bt to hydrolyze GTP. We present pseudoatomic models of both the two- and four-protofilament forms based on cryo-electron microscopy reconstructions (10.8 Å and 6.9 Å, respectively) of filaments formed under different nucleotide states. These data lead to a model in which the two-stranded filament is a necessary intermediate along the pathway to formation of the four-stranded filament. Such nucleotide-directed structural polymorphism is to our knowledge an unprecedented mechanism for the formation of polar filaments.

Entities:  

Keywords:  bacterial cytoskeleton; plasmid segregation

Mesh:

Substances:

Year:  2014        PMID: 24550513      PMCID: PMC3948286          DOI: 10.1073/pnas.1318339111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter.

Authors:  Cheryl Jenkins; Ram Samudrala; Iain Anderson; Brian P Hedlund; Giulio Petroni; Natasha Michailova; Nicolas Pinel; Ross Overbeek; Giovanna Rosati; James T Staley
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Insight into tubulin regulation from a complex with colchicine and a stathmin-like domain.

Authors:  Raimond B G Ravelli; Benoît Gigant; Patrick A Curmi; Isabelle Jourdain; Sylvie Lachkar; André Sobel; Marcel Knossow
Journal:  Nature       Date:  2004-03-11       Impact factor: 49.962

Review 4.  Tubulin and FtsZ form a distinct family of GTPases.

Authors:  E Nogales; K H Downing; L A Amos; J Löwe
Journal:  Nat Struct Biol       Date:  1998-06

5.  The iterative helical real space reconstruction method: surmounting the problems posed by real polymers.

Authors:  Edward H Egelman
Journal:  J Struct Biol       Date:  2006-07-11       Impact factor: 2.867

6.  Minireplicon from pBtoxis of Bacillus thuringiensis subsp. israelensis.

Authors:  Mujin Tang; Dennis K Bideshi; Hyun-Woo Park; Brian A Federici
Journal:  Appl Environ Microbiol       Date:  2006-08-25       Impact factor: 4.792

7.  Bacterial cell division protein FtsZ assembles into protofilament sheets and minirings, structural homologs of tubulin polymers.

Authors:  H P Erickson; D W Taylor; K A Taylor; D Bramhill
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

Review 8.  Plasmid segregation mechanisms.

Authors:  Gitte Ebersbach; Kenn Gerdes
Journal:  Annu Rev Genet       Date:  2005       Impact factor: 16.830

9.  A novel FtsZ-like protein is involved in replication of the anthrax toxin-encoding pXO1 plasmid in Bacillus anthracis.

Authors:  Eowyn Tinsley; Saleem A Khan
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

10.  Structure of the tubulin/FtsZ-like protein TubZ from Pseudomonas bacteriophage ΦKZ.

Authors:  Christopher H S Aylett; Thierry Izoré; Linda A Amos; Jan Löwe
Journal:  J Mol Biol       Date:  2013-03-22       Impact factor: 5.469

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  16 in total

1.  Novel actin filaments from Bacillus thuringiensis form nanotubules for plasmid DNA segregation.

Authors:  Shimin Jiang; Akihiro Narita; David Popp; Umesh Ghoshdastider; Lin Jie Lee; Ramanujam Srinivasan; Mohan K Balasubramanian; Toshiro Oda; Fujiet Koh; Mårten Larsson; Robert C Robinson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-12       Impact factor: 11.205

Review 2.  Bacterial Filament Systems: Toward Understanding Their Emergent Behavior and Cellular Functions.

Authors:  Ye-Jin Eun; Mrinal Kapoor; Saman Hussain; Ethan C Garner
Journal:  J Biol Chem       Date:  2015-05-08       Impact factor: 5.157

Review 3.  X-ray crystallography over the past decade for novel drug discovery - where are we heading next?

Authors:  Heping Zheng; Katarzyna B Handing; Matthew D Zimmerman; Ivan G Shabalin; Steven C Almo; Wladek Minor
Journal:  Expert Opin Drug Discov       Date:  2015-07-15       Impact factor: 6.098

4.  A novel transcriptional activator, tubX, is required for the stability of Bacillus sphaericus mosquitocidal plasmid pBsph.

Authors:  Yong Ge; Ni Zhao; Xiaomin Hu; Tingyu Shi; Quanxin Cai; Zhiming Yuan
Journal:  J Bacteriol       Date:  2014-09-29       Impact factor: 3.490

5.  Plasmid segregation by a moving ATPase gradient.

Authors:  Daniela Kiekebusch; Martin Thanbichler
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-20       Impact factor: 11.205

6.  Inside out: tubulin cytomotive filaments versus microtubules.

Authors:  Haixin Sui
Journal:  Structure       Date:  2014-04-08       Impact factor: 5.006

7.  The C-terminal region of the plasmid partitioning protein TubY is a tetramer that can bind membranes and DNA.

Authors:  Ikuko Hayashi
Journal:  J Biol Chem       Date:  2020-10-22       Impact factor: 5.157

8.  The Phage Nucleus and Tubulin Spindle Are Conserved among Large Pseudomonas Phages.

Authors:  Vorrapon Chaikeeratisak; Katrina Nguyen; MacKennon E Egan; Marcella L Erb; Anastasia Vavilina; Joe Pogliano
Journal:  Cell Rep       Date:  2017-08-15       Impact factor: 9.423

9.  The TubR-centromere complex adopts a double-ring segrosome structure in Type III partition systems.

Authors:  Bárbara Martín-García; Alejandro Martín-González; Carolina Carrasco; Ana M Hernández-Arriaga; Rubén Ruíz-Quero; Ramón Díaz-Orejas; Clara Aicart-Ramos; Fernando Moreno-Herrero; María A Oliva
Journal:  Nucleic Acids Res       Date:  2018-06-20       Impact factor: 16.971

Review 10.  Prokaryotic cytoskeletons: protein filaments organizing small cells.

Authors:  James Wagstaff; Jan Löwe
Journal:  Nat Rev Microbiol       Date:  2018-01-22       Impact factor: 60.633

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