Literature DB >> 24549671

Antisense methods to modulate pre-mRNA splicing.

Joonbae Seo1, Eric W Ottesen, Ravindra N Singh.   

Abstract

The dynamic process of pre-mRNA splicing is regulated by combinatorial control exerted by overlapping cis-elements that are unique to every exon and its flanking intronic sequences. Splicing cis-elements are usually 4-8-nucleotide-long linear motifs that furnish interaction sites for specific proteins. Secondary and higher-order RNA structures exert an additional layer of control by providing accessibility to cis-elements. Antisense oligonucleotides (ASOs) that block splicing cis-elements and/or affect RNA structure have been shown to modulate alternative splicing in vivo. Consistently, ASO-based strategies have emerged as a powerful tool for therapeutic manipulation of aberrant splicing in pathological conditions. Here we describe the application of an ASO-based approach for the enhanced production of the full-length mRNA of SMN2 in spinal muscular atrophy patient cells.

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Year:  2014        PMID: 24549671     DOI: 10.1007/978-1-62703-980-2_20

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

1.  Kv1.3 modulates neuroinflammation and neurodegeneration in Parkinson's disease.

Authors:  Souvarish Sarkar; Hai M Nguyen; Emir Malovic; Jie Luo; Monica Langley; Bharathi N Palanisamy; Neeraj Singh; Sireesha Manne; Matthew Neal; Michelle Gabrielle; Ahmed Abdalla; Poojya Anantharam; Dharmin Rokad; Nikhil Panicker; Vikrant Singh; Muhammet Ay; Adhithiya Charli; Dilshan Harischandra; Lee-Way Jin; Huajun Jin; Srikant Rangaraju; Vellareddy Anantharam; Heike Wulff; Anumantha G Kanthasamy
Journal:  J Clin Invest       Date:  2020-08-03       Impact factor: 14.808

2.  Manganese activates NLRP3 inflammasome signaling and propagates exosomal release of ASC in microglial cells.

Authors:  Souvarish Sarkar; Dharmin Rokad; Emir Malovic; Jie Luo; Dilshan S Harischandra; Huajun Jin; Vellareddy Anantharam; Xuemei Huang; Mechelle Lewis; Arthi Kanthasamy; Anumantha G Kanthasamy
Journal:  Sci Signal       Date:  2019-01-08       Impact factor: 8.192

3.  Manganese exposure induces neuroinflammation by impairing mitochondrial dynamics in astrocytes.

Authors:  Souvarish Sarkar; Emir Malovic; Dilshan S Harischandra; Hilary A Ngwa; Anamitra Ghosh; Colleen Hogan; Dharmin Rokad; Gary Zenitsky; Huajun Jin; Vellareddy Anantharam; Anumantha G Kanthasamy; Arthi Kanthasamy
Journal:  Neurotoxicology       Date:  2017-05-21       Impact factor: 4.294

4.  Cobinamide is effective for treatment of hydrogen sulfide-induced neurological sequelae in a mouse model.

Authors:  Poojya Anantharam; Elizabeth M Whitley; Belinda Mahama; Dong-Suk Kim; Souvarish Sarkar; Cristina Santana; Adriano Chan; Anumantha G Kanthasamy; Arthi Kanthasamy; Gerry R Boss; Wilson K Rumbeiha
Journal:  Ann N Y Acad Sci       Date:  2017-11       Impact factor: 5.691

Review 5.  Mechanism of Splicing Regulation of Spinal Muscular Atrophy Genes.

Authors:  Ravindra N Singh; Natalia N Singh
Journal:  Adv Neurobiol       Date:  2018

6.  Involvement of c-Abl Kinase in Microglial Activation of NLRP3 Inflammasome and Impairment in Autolysosomal System.

Authors:  Vivek Lawana; Neeraj Singh; Souvarish Sarkar; Adhithiya Charli; Huajun Jin; Vellareddy Anantharam; Anumantha G Kanthasamy; Arthi Kanthasamy
Journal:  J Neuroimmune Pharmacol       Date:  2017-05-02       Impact factor: 4.147

7.  Characterization and comparative analysis of a new mouse microglial cell model for studying neuroinflammatory mechanisms during neurotoxic insults.

Authors:  Souvarish Sarkar; Emir Malovic; Deeksha Sarda; Vivek Lawana; Dharmin Rokad; Huajun Jin; Vellareddy Anantharam; Arthi Kanthasamy; Anumantha G Kanthasamy
Journal:  Neurotoxicology       Date:  2018-05-30       Impact factor: 4.294

8.  Role of the Fyn-PKCδ signaling in SE-induced neuroinflammation and epileptogenesis in experimental models of temporal lobe epilepsy.

Authors:  Shaunik Sharma; Steven Carlson; Sreekanth Puttachary; Souvarish Sarkar; Lucas Showman; Marson Putra; Anumantha G Kanthasamy; Thimmasettappa Thippeswamy
Journal:  Neurobiol Dis       Date:  2017-11-29       Impact factor: 5.996

9.  Oligonucleotide-induced alternative splicing of serotonin 2C receptor reduces food intake.

Authors:  Zhaiyi Zhang; Manli Shen; Paul J Gresch; Masoud Ghamari-Langroudi; Alexander G Rabchevsky; Ronald B Emeson; Stefan Stamm
Journal:  EMBO Mol Med       Date:  2016-08-01       Impact factor: 12.137

10.  Mitochondrial impairment in microglia amplifies NLRP3 inflammasome proinflammatory signaling in cell culture and animal models of Parkinson's disease.

Authors:  Souvarish Sarkar; Emir Malovic; Dilshan S Harishchandra; Shivani Ghaisas; Nikhil Panicker; Adhithiya Charli; Bharathi N Palanisamy; Dharmin Rokad; Huajun Jin; Vellareddy Anantharam; Arthi Kanthasamy; Anumantha G Kanthasamy
Journal:  NPJ Parkinsons Dis       Date:  2017-10-17
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