Literature DB >> 24534749

Recent discoveries and applications involving small-molecule microarrays.

Jiyoung A Hong1, Dylan V Neel2, Dina Wassaf2, Francisco Caballero2, Angela N Koehler3.   

Abstract

High-throughput and unbiased binding assays have proven useful in probe discovery for a myriad of biomolecules, including targets of unknown structure or function and historically challenging target classes. Over the past decade, a number of novel formats for executing large-scale binding assays have been developed and used successfully in probe discovery campaigns. Here we review the use of one such format, the small-molecule microarray (SMM), as a tool for discovering protein-small molecule interactions. This review will briefly highlight selected recent probe discoveries using SMMs as well as novel uses of SMMs in profiling applications.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24534749      PMCID: PMC3943826          DOI: 10.1016/j.cbpa.2013.09.020

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  50 in total

1.  The expanding world of small molecule microarrays.

Authors:  Mahesh Uttamchandani; Shao Q Yao
Journal:  Methods Mol Biol       Date:  2010

2.  Small molecule microarray: functional-group specific immobilization of small molecules.

Authors:  Hyang Yeon Lee; Seung Bum Park
Journal:  Methods Mol Biol       Date:  2010

3.  Small molecules of different origins have distinct distributions of structural complexity that correlate with protein-binding profiles.

Authors:  Paul A Clemons; Nicole E Bodycombe; Hyman A Carrinski; J Anthony Wilson; Alykhan F Shamji; Bridget K Wagner; Angela N Koehler; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-18       Impact factor: 11.205

4.  Surface modification for small-molecule microarrays and its application to the discovery of a tyrosinase inhibitor.

Authors:  Hyang Yeon Lee; Seung Bum Park
Journal:  Mol Biosyst       Date:  2010-11-16

5.  Small molecule microarray-facilitated screening of affinity-based probes (AfBPs) for gamma-secretase.

Authors:  Haibin Shi; Kai Liu; Ashley Xu; Shao Q Yao
Journal:  Chem Commun (Camb)       Date:  2009-07-14       Impact factor: 6.222

6.  Quantifying structure and performance diversity for sets of small molecules comprising small-molecule screening collections.

Authors:  Paul A Clemons; J Anthony Wilson; Vlado Dančík; Sandrine Muller; Hyman A Carrinski; Bridget K Wagner; Angela N Koehler; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

7.  Identification of candidate IgG biomarkers for Alzheimer's disease via combinatorial library screening.

Authors:  M Muralidhar Reddy; Rosemary Wilson; Johnnie Wilson; Steven Connell; Anne Gocke; Linda Hynan; Dwight German; Thomas Kodadek
Journal:  Cell       Date:  2011-01-07       Impact factor: 41.582

8.  A method for small molecule microarray-based screening for the rapid discovery of affinity-based probes.

Authors:  Haibin Shi; Mahesh Uttamchandani; Shao Q Yao
Journal:  Methods Mol Biol       Date:  2010

9.  Small molecule microarrays enable the discovery of compounds that bind the Alzheimer's Aβ peptide and reduce its cytotoxicity.

Authors:  Jermont Chen; Anne H Armstrong; Angela N Koehler; Michael H Hecht
Journal:  J Am Chem Soc       Date:  2010-11-09       Impact factor: 15.419

10.  A small-molecule inhibitor shows that pirin regulates migration of melanoma cells.

Authors:  Isao Miyazaki; Siro Simizu; Hideo Okumura; Satoshi Takagi; Hiroyuki Osada
Journal:  Nat Chem Biol       Date:  2010-08-15       Impact factor: 15.040

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  13 in total

1.  Molecular Characterization of Mucus Binding.

Authors:  Jacob Witten; Tahoura Samad; Katharina Ribbeck
Journal:  Biomacromolecules       Date:  2019-03-12       Impact factor: 6.988

2.  Probing small-molecule microarrays with tagged proteins in cell lysates.

Authors:  Marius S Pop; Dina Wassaf; Angela N Koehler
Journal:  Curr Protoc Chem Biol       Date:  2014-12-01

3.  Discovery of a Potent GLUT Inhibitor from a Library of Rapafucins by Using 3D Microarrays.

Authors:  Zufeng Guo; Zhiqiang Cheng; Jingxin Wang; Wukun Liu; Hanjing Peng; Yuefan Wang; A V Subba Rao; Ruo-Jing Li; Xue Ying; Preethi Korangath; Maria V Liberti; Yingjun Li; Yongmei Xie; Sam Y Hong; Cordelia Schiene-Fischer; Gunter Fischer; Jason W Locasale; Saraswati Sukumar; Heng Zhu; Jun O Liu
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-31       Impact factor: 15.336

4.  Quantitative dose-response curves from subcellular lipid multilayer microarrays.

Authors:  A E Kusi-Appiah; T W Lowry; E M Darrow; K A Wilson; B P Chadwick; M W Davidson; S Lenhert
Journal:  Lab Chip       Date:  2015-08-21       Impact factor: 6.799

5.  A Somatically Acquired Enhancer of the Androgen Receptor Is a Noncoding Driver in Advanced Prostate Cancer.

Authors:  David Y Takeda; Sándor Spisák; Ji-Heui Seo; Connor Bell; Edward O'Connor; Keegan Korthauer; Dezső Ribli; István Csabai; Norbert Solymosi; Zoltán Szállási; David R Stillman; Paloma Cejas; Xintao Qiu; Henry W Long; Viktória Tisza; Pier Vitale Nuzzo; Mersedeh Rohanizadegan; Mark M Pomerantz; William C Hahn; Matthew L Freedman
Journal:  Cell       Date:  2018-06-14       Impact factor: 41.582

Review 6.  Advances in discovering small molecules to probe protein function in a systems context.

Authors:  Shelby K Doyle; Marius S Pop; Helen L Evans; Angela N Koehler
Journal:  Curr Opin Chem Biol       Date:  2015-11-23       Impact factor: 8.822

7.  Discovery of Inhibitors of MicroRNA-21 Processing Using Small Molecule Microarrays.

Authors:  Colleen M Connelly; Robert E Boer; Michelle H Moon; Peter Gareiss; John S Schneekloth
Journal:  ACS Chem Biol       Date:  2016-12-23       Impact factor: 5.100

Review 8.  Assemblages: functional units formed by cellular phase separation.

Authors:  Jeffrey A Toretsky; Peter E Wright
Journal:  J Cell Biol       Date:  2014-09-01       Impact factor: 10.539

9.  Developing an Efficient and General Strategy for Immobilization of Small Molecules onto Microarrays Using Isocyanate Chemistry.

Authors:  Chenggang Zhu; Xiangdong Zhu; James P Landry; Zhaomeng Cui; Quanfu Li; Yongjun Dang; Lan Mi; Fengyun Zheng; Yiyan Fei
Journal:  Sensors (Basel)       Date:  2016-03-16       Impact factor: 3.576

10.  Proteomic profiling of small-molecule inhibitors reveals dispensability of MTH1 for cancer cell survival.

Authors:  Tatsuro Kawamura; Makoto Kawatani; Makoto Muroi; Yasumitsu Kondoh; Yushi Futamura; Harumi Aono; Miho Tanaka; Kaori Honda; Hiroyuki Osada
Journal:  Sci Rep       Date:  2016-05-23       Impact factor: 4.379

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