Literature DB >> 24534715

Modulation of chromatin modifying complexes by noncoding RNAs in trans.

Ezequiel Názer1, Elissa P Lei2.   

Abstract

Increasing evidence supports a central role for ncRNA in numerous aspects of chromatin function. For instance, ncRNAs can act as a scaffold for the recruitment of certain chromatin modifying complexes to specific sites within the genome. It is easily imaginable how this can occur in cis, but examples also exist whereby targeting of complexes by ncRNA occurs in trans to the site of transcription. Moreover, association of an ncRNA with a particular locus can trigger localization of the gene to a subnuclear structure harboring a specialized transcriptional environment. In this review, we discuss new insights into the mechanisms by which ncRNAs function in trans with respect to Polycomb Group, chromatin insulator, and dosage compensation complexes in mammals and/or Drosophila. Published by Elsevier Ltd.

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Year:  2014        PMID: 24534715      PMCID: PMC4035420          DOI: 10.1016/j.gde.2013.11.019

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  30 in total

1.  CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species.

Authors:  Timur M Yusufzai; Hideaki Tagami; Yoshihiro Nakatani; Gary Felsenfeld
Journal:  Mol Cell       Date:  2004-01-30       Impact factor: 17.970

2.  Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.

Authors:  John L Rinn; Michael Kertesz; Jordon K Wang; Sharon L Squazzo; Xiao Xu; Samantha A Brugmann; L Henry Goodnough; Jill A Helms; Peggy J Farnham; Eran Segal; Howard Y Chang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

3.  Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a.

Authors:  Kyoko L Yap; Side Li; Ana M Muñoz-Cabello; Selina Raguz; Lei Zeng; Shiraz Mujtaba; Jesús Gil; Martin J Walsh; Ming-Ming Zhou
Journal:  Mol Cell       Date:  2010-06-11       Impact factor: 17.970

4.  Genome-wide identification of polycomb-associated RNAs by RIP-seq.

Authors:  Jing Zhao; Toshiro K Ohsumi; Johnny T Kung; Yuya Ogawa; Daniel J Grau; Kavitha Sarma; Ji Joon Song; Robert E Kingston; Mark Borowsky; Jeannie T Lee
Journal:  Mol Cell       Date:  2010-12-22       Impact factor: 17.970

5.  Long noncoding RNA as modular scaffold of histone modification complexes.

Authors:  Miao-Chih Tsai; Ohad Manor; Yue Wan; Nima Mosammaparast; Jordon K Wang; Fei Lan; Yang Shi; Eran Segal; Howard Y Chang
Journal:  Science       Date:  2010-07-08       Impact factor: 47.728

6.  Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA.

Authors:  Hongjie Yao; Kevin Brick; Yvonne Evrard; Tiaojiang Xiao; R Daniel Camerini-Otero; Gary Felsenfeld
Journal:  Genes Dev       Date:  2010-10-21       Impact factor: 11.361

7.  Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.

Authors:  Ahmad M Khalil; Mitchell Guttman; Maite Huarte; Manuel Garber; Arjun Raj; Dianali Rivea Morales; Kelly Thomas; Aviva Presser; Bradley E Bernstein; Alexander van Oudenaarden; Aviv Regev; Eric S Lander; John L Rinn
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-01       Impact factor: 11.205

8.  The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.

Authors:  Di Tian; Sha Sun; Jeannie T Lee
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

Review 9.  Surviving an identity crisis: a revised view of chromatin insulators in the genomics era.

Authors:  Leah H Matzat; Elissa P Lei
Journal:  Biochim Biophys Acta       Date:  2013-11-01

10.  Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.

Authors:  Rajnish A Gupta; Nilay Shah; Kevin C Wang; Jeewon Kim; Hugo M Horlings; David J Wong; Miao-Chih Tsai; Tiffany Hung; Pedram Argani; John L Rinn; Yulei Wang; Pius Brzoska; Benjamin Kong; Rui Li; Robert B West; Marc J van de Vijver; Saraswati Sukumar; Howard Y Chang
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

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  7 in total

1.  Exon-intron circular RNAs regulate transcription in the nucleus.

Authors:  Zhaoyong Li; Chuan Huang; Chun Bao; Liang Chen; Mei Lin; Xiaolin Wang; Guolin Zhong; Bin Yu; Wanchen Hu; Limin Dai; Pengfei Zhu; Zhaoxia Chang; Qingfa Wu; Yi Zhao; Ya Jia; Ping Xu; Huijie Liu; Ge Shan
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

2.  The bxdPRE/TRE element terminates passing through transcription.

Authors:  M M Erokhin; P V Elizar'ev; P G Georgiev; D A Chetverina
Journal:  Dokl Biochem Biophys       Date:  2017-04-19       Impact factor: 0.788

Review 3.  Noncoding RNA as regulators of cardiac fibrosis: current insight and the road ahead.

Authors:  Hui Tao; Jing-Jing Yang; Wei Hu; Kai-Hu Shi; Zi-Yu Deng; Jun Li
Journal:  Pflugers Arch       Date:  2016-01-20       Impact factor: 3.657

Review 4.  One, Two, Three: Polycomb Proteins Hit All Dimensions of Gene Regulation.

Authors:  Stefania Del Prete; Pawel Mikulski; Daniel Schubert; Valérie Gaudin
Journal:  Genes (Basel)       Date:  2015-07-10       Impact factor: 4.096

5.  A Model System in S2 Cells to Test the Functional Activities of Drosophila Insulators.

Authors:  M Tikhonov; N B Gasanov; P Georgiev; O Maksimenko
Journal:  Acta Naturae       Date:  2015 Oct-Dec       Impact factor: 1.845

6.  LANA-Mediated Recruitment of Host Polycomb Repressive Complexes onto the KSHV Genome during De Novo Infection.

Authors:  Zsolt Toth; Bernadett Papp; Kevin Brulois; Youn Jung Choi; Shou-Jiang Gao; Jae U Jung
Journal:  PLoS Pathog       Date:  2016-09-08       Impact factor: 6.823

7.  Transcriptome Analysis of Long Non-coding RNAs and Genes Encoding Paraspeckle Proteins During Human Ovarian Follicle Development.

Authors:  Emil H Ernst; Julie Nielsen; Malene B Ipsen; Palle Villesen; Karin Lykke-Hartmann
Journal:  Front Cell Dev Biol       Date:  2018-07-24
  7 in total

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