Literature DB >> 24527935

From toroidal to rod-like condensates of semiflexible polymers.

Trinh Xuan Hoang1, Achille Giacometti2, Rudolf Podgornik3, Nhung T T Nguyen1, Jayanth R Banavar4, Amos Maritan5.   

Abstract

The competition between toroidal and rod-like conformations as possible ground states for DNA condensation is studied as a function of the stiffness, the length of the DNA, and the form of the long-range interactions between neighboring molecules, using analytical theory supported by Monte Carlo simulations. Both conformations considered are characterized by a local nematic order with hexagonal packing symmetry of neighboring DNA molecules, but differ in global configuration of the chain and the distribution of its curvature as it wraps around to form a condensate. The long-range interactions driving the DNA condensation are assumed to be of the form pertaining to the attractive depletion potential as well as the attractive counterion induced soft potential. In the stiffness-length plane we find a transition between rod-like to toroid condensate for increasing stiffness at a fixed chain length L. Strikingly, the transition line is found to have a L(1/3) dependence irrespective of the details of the long-range interactions between neighboring molecules. When realistic DNA parameters are used, our description reproduces rather well some of the experimental features observed in DNA condensates.

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Year:  2014        PMID: 24527935     DOI: 10.1063/1.4863996

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  2 in total

1.  DNA like-charge attraction and overcharging by divalent counterions in the presence of divalent co-ions.

Authors:  Viet Duc Nguyen; Toan T Nguyen; Paolo Carloni
Journal:  J Biol Phys       Date:  2017-02-11       Impact factor: 1.365

2.  Observations of three "re-entrant" twisted structures in double-stranded DNA dispersion particles.

Authors:  Yuri M Yevdokimov; Sergey G Skuridin; Viktor I Salyanov; Efim I Kats
Journal:  Eur Biophys J       Date:  2021-11-28       Impact factor: 1.733

  2 in total

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