Literature DB >> 28190162

DNA like-charge attraction and overcharging by divalent counterions in the presence of divalent co-ions.

Viet Duc Nguyen1, Toan T Nguyen2,3,4, Paolo Carloni5,6.   

Abstract

Strongly correlated electrostatics of DNA systems has drawn the interest of many groups, especially the condensation and overcharging of DNA by multivalent counterions. By adding counterions of different valencies and shapes, one can enhance or reduce DNA overcharging. In this paper, we focus on the effect of multivalent co-ions, specifically divalent co-ions such as SO[Formula: see text]. A computational experiment of DNA condensation using Monte Carlo simulation in grand canonical ensemble is carried out where the DNA system is in equilibrium with a bulk solution containing a mixture of salt of different valency of co-ions. Compared to systems with purely monovalent co-ions, the influence of divalent co-ions shows up in multiple aspects. Divalent co-ions lead to an increase of monovalent salt in the DNA condensate. Because monovalent salts mostly participate in linear screening of electrostatic interactions in the system, more monovalent salt molecules enter the condensate leads to screening out of short-range DNA-DNA like charge attraction and weaker DNA condensation free energy. The overcharging of DNA by multivalent counterions is also reduced in the presence of divalent co-ions. Strong repulsions between DNA and divalent co-ions and among divalent co-ions themselves lead to a depletion of negative ions near the DNA surface as compared to the case without divalent co-ions. At large distances, the DNA-DNA repulsive interaction is stronger in the presence of divalent co-ions, suggesting that divalent co-ions' role is not only that of simple stronger linear screening.

Entities:  

Keywords:  DNA condensation; DNA overcharging; Multivalent coions; Multivalent counterions

Mesh:

Substances:

Year:  2017        PMID: 28190162      PMCID: PMC5471166          DOI: 10.1007/s10867-017-9443-x

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  18 in total

1.  DNA condensation in two dimensions.

Authors:  I Koltover; K Wagner; C R Safinya
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids.

Authors:  N V Hud; K H Downing
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

3.  Screening of a macroion by multivalent ions: correlation-induced inversion of charge.

Authors:  B I Shklovskii
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1999-11

4.  Dressed counterions: strong electrostatic coupling in the presence of salt.

Authors:  Matej Kanduc; Ali Naji; Jan Forsman; Rudolf Podgornik
Journal:  J Chem Phys       Date:  2010-03-28       Impact factor: 3.488

5.  Grand-canonical simulation of DNA condensation with two salts, effect of divalent counterion size.

Authors:  Toan T Nguyen
Journal:  J Chem Phys       Date:  2016-02-14       Impact factor: 3.488

6.  Forces during bacteriophage DNA packaging and ejection.

Authors:  Prashant K Purohit; Mandar M Inamdar; Paul D Grayson; Todd M Squires; Jané Kondev; Rob Phillips
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

7.  Asymmetric Coulomb fluids at randomly charged dielectric interfaces: anti-fragility, overcharging and charge inversion.

Authors:  Ali Naji; Malihe Ghodrat; Haniyeh Komaie-Moghaddam; Rudolf Podgornik
Journal:  J Chem Phys       Date:  2014-11-07       Impact factor: 3.488

Review 8.  Nanomaterials. Programmable materials and the nature of the DNA bond.

Authors:  Matthew R Jones; Nadrian C Seeman; Chad A Mirkin
Journal:  Science       Date:  2015-02-20       Impact factor: 47.728

9.  Ionic and structural specificity effects of natural and synthetic polyamines on the aggregation and resolubilization of single-, double-, and triple-stranded DNA.

Authors:  M Saminathan; T Antony; A Shirahata; L H Sigal; T Thomas; T J Thomas
Journal:  Biochemistry       Date:  1999-03-23       Impact factor: 3.162

10.  Inhibition of DNA ejection from bacteriophage by Mg(+2) counterions.

Authors:  Sell Lee; C V Tran; T T Nguyen
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

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  1 in total

1.  Ionic effects on the temperature-force phase diagram of DNA.

Authors:  Sitichoke Amnuanpol
Journal:  J Biol Phys       Date:  2017-09-14       Impact factor: 1.365

  1 in total

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