Literature DB >> 24527003

1-Ethyl-5-iodo-indoline-2,3-dione.

Lei Wang1, Yu-Xiang Shen2, Jian-Tong Dong1, Man Zhang1, Qi Fang2.   

Abstract

There are two independent mol-ecules in the asymmetric unit of the title compound, C10H8INO2, which differ in the degree of planarity. The iodo-indoline-2,3-dione skeleton of mol-ecule 1 is essentially planar [mean deviation = 0.003 (2) Å for the nine non-H atoms of the indoline core, with a maximum deviation of 0.033 (1) Å for the I atom]. The I atom and O atom in the 3-position of mol-ecule 2 deviate by 0.195 (1) and 0.120 (2) Å, respectively, from the least-squares plane through the nine non-H atoms of the indoline core. Mol-ecules 1 and 2 are roughly coplanar, the mean planes through their cores making a dihedral angle of 6.84 (1)°. This coplanarity results in a layer-like structure parallel to (6,11,17) in the crystal, the distance between adjacent least-squares planes through the cores of mol-ecules 1 and 2 being 3.37 (1) Å. In such a layer, mol-ecules 1 and 2 are linked by C-H⋯O hydrogen bonds, forming chains along [11-1]. The chains are further coupled to construct a kind of double-chain structure via I⋯O inter-actions [3.270 (2) Å].

Entities:  

Year:  2013        PMID: 24527003      PMCID: PMC3914098          DOI: 10.1107/S1600536813033539

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of indoline-2,3-dione in drug design, see: Silva et al. (2001 ▶). For the synthesis of the title compound, see: Ji et al. (2010 ▶). For related structures, see: Garden et al. (2006 ▶); Abid et al. (2008 ▶); Kurkin et al. (2008 ▶).

Experimental

Crystal data

C10H8INO2 M = 301.07 Triclinic, a = 9.9658 (2) Å b = 10.1453 (2) Å c = 11.3007 (2) Å α = 71.188 (1)° β = 72.599 (1)° γ = 84.434 (1)° V = 1032.04 (3) Å3 Z = 4 Mo Kα radiation μ = 3.08 mm−1 T = 295 K 0.27 × 0.21 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.490, T max = 0.746 13515 measured reflections 5091 independent reflections 4358 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.066 S = 1.01 5091 reflections 279 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.74 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813033539/vm2202sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813033539/vm2202Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813033539/vm2202Isup3.cml Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H8INO2Z = 4
Mr = 301.07F(000) = 576
Triclinic, P1Dx = 1.938 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.9658 (2) ÅCell parameters from 7943 reflections
b = 10.1453 (2) Åθ = 2.4–28.7°
c = 11.3007 (2) ŵ = 3.08 mm1
α = 71.188 (1)°T = 295 K
β = 72.599 (1)°Plank, orange
γ = 84.434 (1)°0.27 × 0.21 × 0.10 mm
V = 1032.04 (3) Å3
Bruker APEXII CCD diffractometer5091 independent reflections
Radiation source: fine-focus sealed tube4358 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
Detector resolution: 8.3 pixels mm-1θmax = 28.3°, θmin = 2.0°
φ and ω scansh = −13→13
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −13→13
Tmin = 0.490, Tmax = 0.746l = −15→13
13515 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: mixed
wR(F2) = 0.066H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0323P)2 + 0.529P] where P = (Fo2 + 2Fc2)/3
5091 reflections(Δ/σ)max = 0.001
279 parametersΔρmax = 0.74 e Å3
0 restraintsΔρmin = −0.44 e Å3
Experimental. Scan width 0.5° ω and φ, Crystal to detector distance 5.964 cm, exposure time 20 s, 19 h for data collection
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I1−0.188160 (18)0.385210 (17)0.659889 (17)0.05692 (6)
I21.215992 (18)0.17083 (2)0.320573 (19)0.06423 (7)
O10.1685 (2)−0.30982 (18)0.98576 (18)0.0606 (5)
O2−0.12166 (19)−0.20187 (18)1.00153 (18)0.0587 (4)
O40.5791 (2)0.1463 (2)0.5519 (2)0.0810 (7)
O30.41994 (19)0.3947 (2)0.4463 (2)0.0673 (5)
N10.22397 (19)−0.09288 (18)0.83363 (18)0.0448 (4)
C290.6039 (3)0.5967 (3)0.2206 (3)0.0574 (6)
H29A0.67990.66220.19500.069*
H29B0.52000.63370.26930.069*
C5−0.0444 (2)0.2289 (2)0.7122 (2)0.0451 (5)
C60.0995 (3)0.2509 (2)0.6564 (2)0.0492 (5)
C70.1973 (2)0.1495 (2)0.6900 (2)0.0476 (5)
C80.1470 (2)0.0250 (2)0.7828 (2)0.0408 (4)
C90.3765 (2)−0.1004 (3)0.8019 (3)0.0521 (5)
H9A0.4165−0.05570.70920.063*
H9B0.4054−0.19730.82160.063*
C100.4329 (3)−0.0314 (4)0.8766 (3)0.0731 (8)
H10A0.39860.06250.86250.110*
H10B0.5338−0.03060.84700.110*
H10C0.4023−0.08200.96790.110*
C10.1354 (3)−0.1967 (2)0.9239 (2)0.0453 (5)
C2−0.0166 (2)−0.1390 (2)0.9316 (2)0.0444 (5)
C30.0021 (2)0.0023 (2)0.8392 (2)0.0409 (4)
C4−0.0948 (2)0.1026 (2)0.8047 (2)0.0441 (5)
C251.0250 (2)0.2682 (2)0.3052 (2)0.0456 (5)
C240.9007 (3)0.2058 (2)0.3914 (2)0.0492 (5)
C230.7765 (2)0.2774 (2)0.3829 (2)0.0439 (5)
C280.7764 (2)0.4083 (2)0.2908 (2)0.0404 (4)
N20.63970 (19)0.4636 (2)0.30430 (19)0.0467 (4)
C300.5792 (4)0.5831 (4)0.1017 (3)0.0877 (11)
H30A0.66290.54890.05190.132*
H30B0.55530.67240.04980.132*
H30C0.50340.51910.12650.132*
C220.6307 (3)0.2473 (3)0.4615 (2)0.0536 (6)
C210.5455 (2)0.3764 (3)0.4059 (2)0.0514 (5)
C270.9001 (2)0.4696 (2)0.2032 (2)0.0461 (5)
C261.0245 (2)0.3975 (2)0.2122 (2)0.0468 (5)
H4−0.189 (3)0.089 (3)0.843 (2)0.046 (6)*
H60.132 (3)0.339 (3)0.596 (3)0.055 (7)*
H70.299 (3)0.166 (3)0.650 (3)0.050 (7)*
H261.110 (3)0.439 (3)0.149 (3)0.055 (7)*
H270.897 (3)0.557 (3)0.142 (3)0.052 (7)*
H240.903 (3)0.124 (3)0.449 (3)0.055 (7)*
U11U22U33U12U13U23
I10.05293 (10)0.05269 (10)0.06295 (11)0.00741 (7)−0.02024 (8)−0.01363 (8)
I20.04713 (10)0.07268 (13)0.07074 (12)0.01030 (8)−0.01917 (8)−0.02004 (9)
O10.0694 (12)0.0412 (9)0.0596 (10)0.0013 (8)−0.0147 (9)−0.0037 (8)
O20.0541 (10)0.0492 (9)0.0564 (10)−0.0162 (8)−0.0007 (8)−0.0034 (8)
O40.0520 (11)0.0725 (13)0.0778 (14)−0.0168 (10)−0.0029 (10)0.0214 (11)
O30.0382 (9)0.0733 (13)0.0721 (12)−0.0045 (8)−0.0035 (8)−0.0080 (10)
N10.0424 (10)0.0391 (9)0.0449 (10)−0.0014 (7)−0.0058 (8)−0.0079 (8)
C290.0451 (13)0.0429 (12)0.0678 (16)0.0045 (10)−0.0062 (11)−0.0056 (11)
C50.0458 (12)0.0415 (11)0.0449 (11)0.0021 (9)−0.0113 (9)−0.0113 (9)
C60.0475 (12)0.0407 (11)0.0457 (12)−0.0062 (9)−0.0040 (9)−0.0016 (9)
C70.0402 (11)0.0448 (11)0.0442 (11)−0.0079 (9)−0.0003 (9)−0.0040 (9)
C80.0409 (10)0.0389 (10)0.0373 (10)−0.0038 (8)−0.0053 (8)−0.0093 (8)
C90.0407 (11)0.0510 (12)0.0557 (13)0.0068 (10)−0.0043 (10)−0.0152 (11)
C100.0457 (14)0.097 (2)0.086 (2)0.0070 (14)−0.0178 (14)−0.0434 (18)
C10.0527 (13)0.0380 (10)0.0417 (11)−0.0038 (9)−0.0080 (9)−0.0115 (9)
C20.0485 (12)0.0391 (10)0.0400 (10)−0.0090 (9)−0.0041 (9)−0.0097 (9)
C30.0411 (11)0.0373 (10)0.0394 (10)−0.0070 (8)−0.0045 (8)−0.0098 (8)
C40.0380 (11)0.0454 (11)0.0442 (11)−0.0059 (9)−0.0036 (9)−0.0136 (9)
C250.0407 (11)0.0471 (11)0.0472 (11)0.0010 (9)−0.0094 (9)−0.0151 (9)
C240.0499 (13)0.0404 (11)0.0476 (12)−0.0034 (9)−0.0104 (10)−0.0027 (10)
C230.0414 (11)0.0421 (11)0.0403 (10)−0.0076 (8)−0.0052 (8)−0.0058 (9)
C280.0401 (11)0.0375 (10)0.0388 (10)−0.0039 (8)−0.0059 (8)−0.0094 (8)
N20.0378 (9)0.0440 (9)0.0481 (10)−0.0031 (7)−0.0045 (8)−0.0067 (8)
C300.087 (2)0.101 (3)0.0606 (18)0.025 (2)−0.0243 (16)−0.0097 (18)
C220.0448 (12)0.0535 (13)0.0496 (13)−0.0112 (10)−0.0068 (10)−0.0017 (10)
C210.0404 (12)0.0558 (13)0.0505 (12)−0.0079 (10)−0.0050 (9)−0.0115 (11)
C270.0435 (12)0.0392 (11)0.0445 (11)−0.0066 (9)−0.0032 (9)−0.0047 (9)
C260.0394 (11)0.0457 (11)0.0464 (11)−0.0057 (9)−0.0011 (9)−0.0108 (9)
I1—C52.092 (2)C10—H10A0.9600
I2—C252.086 (2)C10—H10B0.9600
O1—C11.209 (3)C10—H10C0.9600
O2—C21.198 (3)C1—C21.558 (3)
O4—C221.213 (3)C2—C31.467 (3)
O3—C211.215 (3)C3—C41.378 (3)
N1—C11.371 (3)C4—H40.91 (3)
N1—C81.411 (3)C25—C241.384 (3)
N1—C91.454 (3)C25—C261.392 (3)
C29—N21.459 (3)C24—C231.386 (3)
C29—C301.486 (5)C24—H240.88 (3)
C29—H29A0.9700C23—C281.399 (3)
C29—H29B0.9700C23—C221.460 (3)
C5—C41.391 (3)C28—C271.381 (3)
C5—C61.391 (3)C28—N21.406 (3)
C6—C71.388 (3)N2—C211.358 (3)
C6—H60.95 (3)C30—H30A0.9600
C7—C81.378 (3)C30—H30B0.9600
C7—H70.99 (3)C30—H30C0.9600
C8—C31.401 (3)C22—C211.551 (4)
C9—C101.503 (4)C27—C261.391 (3)
C9—H9A0.9700C27—H270.93 (3)
C9—H9B0.9700C26—H260.96 (3)
C1—N1—C8110.78 (18)C4—C3—C8121.64 (19)
C1—N1—C9124.24 (19)C4—C3—C2131.1 (2)
C8—N1—C9124.86 (18)C8—C3—C2107.30 (19)
N2—C29—C30112.1 (2)C3—C4—C5117.8 (2)
N2—C29—H29A109.2C3—C4—H4121.8 (16)
C30—C29—H29A109.2C5—C4—H4120.4 (16)
N2—C29—H29B109.2C24—C25—C26121.0 (2)
C30—C29—H29B109.2C24—C25—I2119.38 (17)
H29A—C29—H29B107.9C26—C25—I2119.59 (17)
C4—C5—C6120.3 (2)C25—C24—C23117.7 (2)
C4—C5—I1118.94 (17)C25—C24—H24119.6 (18)
C6—C5—I1120.75 (16)C23—C24—H24122.7 (18)
C7—C6—C5122.0 (2)C24—C23—C28121.3 (2)
C7—C6—H6118.8 (17)C24—C23—C22132.1 (2)
C5—C6—H6119.2 (17)C28—C23—C22106.5 (2)
C8—C7—C6117.6 (2)C27—C28—C23121.1 (2)
C8—C7—H7121.0 (16)C27—C28—N2127.6 (2)
C6—C7—H7121.5 (16)C23—C28—N2111.23 (18)
C7—C8—C3120.7 (2)C21—N2—C28110.83 (18)
C7—C8—N1128.4 (2)C21—N2—C29124.6 (2)
C3—C8—N1110.93 (18)C28—N2—C29124.59 (18)
N1—C9—C10112.0 (2)C29—C30—H30A109.5
N1—C9—H9A109.2C29—C30—H30B109.5
C10—C9—H9A109.2H30A—C30—H30B109.5
N1—C9—H9B109.2C29—C30—H30C109.5
C10—C9—H9B109.2H30A—C30—H30C109.5
H9A—C9—H9B107.9H30B—C30—H30C109.5
C9—C10—H10A109.5O4—C22—C23130.6 (3)
C9—C10—H10B109.5O4—C22—C21124.0 (2)
H10A—C10—H10B109.5C23—C22—C21105.38 (19)
C9—C10—H10C109.5O3—C21—N2127.6 (2)
H10A—C10—H10C109.5O3—C21—C22126.4 (2)
H10B—C10—H10C109.5N2—C21—C22105.98 (19)
O1—C1—N1126.9 (2)C28—C27—C26117.4 (2)
O1—C1—C2127.0 (2)C28—C27—H27119.1 (17)
N1—C1—C2106.10 (18)C26—C27—H27123.5 (17)
O2—C2—C3130.5 (2)C27—C26—C25121.5 (2)
O2—C2—C1124.6 (2)C27—C26—H26116.9 (17)
C3—C2—C1104.89 (18)C25—C26—H26121.6 (17)
C4—C5—C6—C7−0.1 (4)C26—C25—C24—C23−0.8 (4)
I1—C5—C6—C7179.48 (19)I2—C25—C24—C23176.44 (18)
C5—C6—C7—C8−0.7 (4)C25—C24—C23—C28−0.2 (4)
C6—C7—C8—C30.7 (4)C25—C24—C23—C22−175.8 (3)
C6—C7—C8—N1−179.6 (2)C24—C23—C28—C271.4 (4)
C1—N1—C8—C7−179.6 (2)C22—C23—C28—C27177.9 (2)
C9—N1—C8—C74.4 (4)C24—C23—C28—N2−177.2 (2)
C1—N1—C8—C30.1 (3)C22—C23—C28—N2−0.6 (3)
C9—N1—C8—C3−175.9 (2)C27—C28—N2—C21−176.6 (2)
C1—N1—C9—C10−95.9 (3)C23—C28—N2—C211.9 (3)
C8—N1—C9—C1079.5 (3)C27—C28—N2—C293.4 (4)
C8—N1—C1—O1−179.3 (2)C23—C28—N2—C29−178.2 (2)
C9—N1—C1—O1−3.2 (4)C30—C29—N2—C21−93.7 (3)
C8—N1—C1—C20.2 (2)C30—C29—N2—C2886.3 (3)
C9—N1—C1—C2176.3 (2)C24—C23—C22—O4−4.6 (5)
O1—C1—C2—O2−0.2 (4)C28—C23—C22—O4179.4 (3)
N1—C1—C2—O2−179.7 (2)C24—C23—C22—C21175.4 (3)
O1—C1—C2—C3179.0 (2)C28—C23—C22—C21−0.7 (3)
N1—C1—C2—C3−0.5 (2)C28—N2—C21—O3177.6 (3)
C7—C8—C3—C4−0.1 (3)C29—N2—C21—O3−2.3 (4)
N1—C8—C3—C4−179.8 (2)C28—N2—C21—C22−2.2 (3)
C7—C8—C3—C2179.3 (2)C29—N2—C21—C22177.9 (2)
N1—C8—C3—C2−0.4 (2)O4—C22—C21—O31.9 (5)
O2—C2—C3—C4−0.9 (4)C23—C22—C21—O3−178.0 (3)
C1—C2—C3—C4179.9 (2)O4—C22—C21—N2−178.3 (3)
O2—C2—C3—C8179.7 (3)C23—C22—C21—N21.7 (3)
C1—C2—C3—C80.5 (2)C23—C28—C27—C26−1.4 (3)
C8—C3—C4—C5−0.6 (3)N2—C28—C27—C26176.9 (2)
C2—C3—C4—C5−179.9 (2)C28—C27—C26—C250.4 (4)
C6—C5—C4—C30.7 (3)C24—C25—C26—C270.8 (4)
I1—C5—C4—C3−178.87 (16)I2—C25—C26—C27−176.51 (19)
D—H···AD—HH···AD···AD—H···A
C29—H29A···O2i0.972.573.399 (3)144
C27—H27···O2i0.93 (3)2.48 (3)3.407 (3)174 (3)
C9—H9A···O40.972.563.366 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C29—H29A⋯O2i 0.972.573.399 (3)144
C27—H27⋯O2i 0.93 (3)2.48 (3)3.407 (3)174 (3)
C9—H9A⋯O40.972.563.366 (3)140

Symmetry code: (i) .

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