| Literature DB >> 24526990 |
Shaaban K Mohamed1, Joel T Mague2, Mehmet Akkurt3, Abdel-Aal M Jaber4, Mustafa R Albayati5.
Abstract
In the title compound, C15H10ClN3O2, the benzene ring is slightly twisted out of the plane of the 2,3-di-hydro-1H-indole ring system (r.m.s. deviation = 0.007 Å), forming a dihedral angle of 7.4 (3)°. An intra-molecular N-H⋯O hydrogen bond forms a six-membered ring. In the crystal, mol-ecules are linked via N-H⋯O and C-H⋯O hydrogen bonds, forming layers alternately perpendicular to [011] and [0-11].Entities:
Year: 2013 PMID: 24526990 PMCID: PMC3914087 DOI: 10.1107/S1600536813033345
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H10ClN3O2 | |
| Orthorhombic, | Cu |
| Hall symbol: P 2c -2ac | Cell parameters from 3290 reflections |
| θ = 2.9–68.5° | |
| µ = 2.72 mm−1 | |
| Plate, yellow | |
| 0.22 × 0.17 × 0.01 mm |
| Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 1596 independent reflections |
| Radiation source: INCOATEC IµS micro–focus source | 1434 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 68.5°, θmin = 5.7° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 4190 measured reflections |
| Refinement on | Secondary atom site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| W = 1/[Σ2( | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.30 e Å−3 | |
| 1596 reflections | Δρmin = −0.37 e Å−3 |
| 193 parameters | Absolute structure: Flack (1983), 478 Friedal pairs (44% coverage) |
| 3 restraints | Absolute structure parameter: −0.06 (5) |
| Primary atom site location: difference Fourier map |
| Geometry. Bond distances, angles |
| Refinement. Refinement on |
| Cl1 | −0.02432 (5) | 0.0784 (4) | 0.5130 (3) | 0.0317 (6) | |
| O1 | 0.15220 (15) | 0.7554 (12) | 0.7066 (7) | 0.0247 (19) | |
| O2 | 0.21783 (16) | 0.0289 (11) | 0.3951 (7) | 0.0240 (19) | |
| N1 | 0.18451 (17) | 0.4151 (14) | 0.5756 (8) | 0.0187 (19) | |
| N2 | 0.22478 (17) | 0.5046 (12) | 0.6135 (8) | 0.0173 (19) | |
| N3 | 0.29242 (19) | 0.0513 (13) | 0.4056 (8) | 0.0203 (19) | |
| C1 | 0.0263 (2) | 0.2224 (17) | 0.5393 (10) | 0.026 (3) | |
| C2 | 0.0616 (2) | 0.1072 (16) | 0.4604 (10) | 0.023 (2) | |
| C3 | 0.1021 (2) | 0.2172 (17) | 0.4862 (10) | 0.026 (3) | |
| C4 | 0.1069 (2) | 0.4273 (16) | 0.5882 (9) | 0.020 (2) | |
| C5 | 0.0705 (2) | 0.5395 (17) | 0.6625 (10) | 0.026 (3) | |
| C6 | 0.0301 (2) | 0.4340 (18) | 0.6391 (11) | 0.028 (3) | |
| C7 | 0.1495 (2) | 0.5554 (18) | 0.6291 (10) | 0.024 (3) | |
| C8 | 0.2560 (2) | 0.3623 (15) | 0.5494 (9) | 0.018 (2) | |
| C9 | 0.2517 (2) | 0.1344 (16) | 0.4425 (10) | 0.022 (2) | |
| C10 | 0.3234 (2) | 0.2196 (15) | 0.4808 (9) | 0.018 (2) | |
| C11 | 0.3677 (2) | 0.2028 (16) | 0.4744 (10) | 0.022 (2) | |
| C12 | 0.3910 (2) | 0.3895 (16) | 0.5590 (10) | 0.025 (3) | |
| C13 | 0.3700 (2) | 0.5837 (17) | 0.6480 (10) | 0.025 (3) | |
| C14 | 0.3253 (2) | 0.5978 (15) | 0.6566 (9) | 0.019 (3) | |
| C15 | 0.3018 (2) | 0.4074 (16) | 0.5723 (9) | 0.021 (3) | |
| H1 | 0.1866 (10) | 0.264 (9) | 0.523 (10) | 0.0220* | |
| H2 | 0.05820 | −0.04030 | 0.39190 | 0.0280* | |
| H3 | 0.12660 | 0.14550 | 0.43240 | 0.0310* | |
| H3A | 0.30090 | −0.06130 | 0.32440 | 0.0250* | |
| H5 | 0.07370 | 0.68880 | 0.72940 | 0.0320* | |
| H6 | 0.00550 | 0.50730 | 0.69140 | 0.0340* | |
| H11 | 0.38160 | 0.06920 | 0.41470 | 0.0270* | |
| H12 | 0.42160 | 0.38530 | 0.55640 | 0.0290* | |
| H13 | 0.38670 | 0.70950 | 0.70410 | 0.0300* | |
| H14 | 0.31130 | 0.73060 | 0.71710 | 0.0230* |
| Cl1 | 0.0189 (8) | 0.0414 (13) | 0.0349 (11) | −0.0052 (7) | −0.0031 (9) | 0.0024 (11) |
| O1 | 0.022 (3) | 0.030 (4) | 0.022 (3) | 0.004 (2) | −0.001 (2) | −0.009 (3) |
| O2 | 0.023 (3) | 0.030 (4) | 0.019 (3) | −0.002 (2) | −0.001 (2) | −0.007 (3) |
| N1 | 0.015 (3) | 0.024 (4) | 0.017 (3) | 0.003 (2) | −0.002 (2) | −0.006 (3) |
| N2 | 0.019 (3) | 0.021 (4) | 0.012 (3) | 0.000 (2) | 0.002 (2) | 0.000 (3) |
| N3 | 0.020 (3) | 0.024 (4) | 0.017 (3) | 0.001 (3) | −0.001 (3) | −0.007 (3) |
| C1 | 0.020 (3) | 0.040 (6) | 0.019 (4) | −0.006 (3) | −0.008 (3) | 0.009 (4) |
| C2 | 0.023 (3) | 0.023 (5) | 0.024 (4) | −0.003 (3) | −0.004 (3) | −0.006 (4) |
| C3 | 0.026 (4) | 0.033 (5) | 0.019 (4) | −0.001 (3) | −0.002 (4) | −0.005 (4) |
| C4 | 0.025 (4) | 0.025 (5) | 0.010 (3) | −0.004 (3) | −0.003 (3) | 0.002 (3) |
| C5 | 0.022 (4) | 0.039 (6) | 0.018 (4) | 0.003 (3) | 0.001 (3) | −0.005 (4) |
| C6 | 0.021 (4) | 0.040 (6) | 0.023 (4) | 0.007 (3) | 0.005 (3) | −0.001 (4) |
| C7 | 0.022 (4) | 0.036 (6) | 0.015 (4) | 0.006 (3) | 0.001 (3) | 0.003 (4) |
| C8 | 0.025 (3) | 0.019 (5) | 0.009 (4) | 0.002 (3) | 0.005 (3) | 0.002 (3) |
| C9 | 0.013 (3) | 0.038 (5) | 0.016 (4) | 0.001 (3) | −0.002 (3) | 0.005 (4) |
| C10 | 0.017 (3) | 0.025 (5) | 0.013 (4) | 0.000 (3) | −0.003 (3) | −0.004 (3) |
| C11 | 0.025 (3) | 0.022 (5) | 0.020 (4) | 0.006 (3) | 0.000 (3) | 0.004 (4) |
| C12 | 0.017 (3) | 0.034 (6) | 0.023 (5) | 0.002 (3) | 0.000 (3) | 0.003 (4) |
| C13 | 0.022 (4) | 0.034 (6) | 0.018 (4) | −0.001 (3) | −0.001 (3) | 0.001 (4) |
| C14 | 0.026 (4) | 0.016 (5) | 0.016 (4) | 0.000 (3) | −0.001 (3) | 0.001 (3) |
| C15 | 0.024 (4) | 0.022 (5) | 0.018 (4) | 0.002 (3) | −0.001 (3) | −0.001 (3) |
| Cl1—C1 | 1.756 (7) | C8—C9 | 1.470 (11) |
| O1—C7 | 1.218 (11) | C8—C15 | 1.452 (9) |
| O2—C9 | 1.246 (9) | C10—C15 | 1.394 (11) |
| N1—N2 | 1.368 (8) | C10—C11 | 1.379 (9) |
| N1—C7 | 1.379 (10) | C11—C12 | 1.389 (11) |
| N2—C8 | 1.324 (9) | C12—C13 | 1.399 (11) |
| N3—C9 | 1.368 (9) | C13—C14 | 1.391 (9) |
| N3—C10 | 1.434 (9) | C14—C15 | 1.405 (11) |
| N1—H1 | 0.90 (5) | C2—H2 | 0.9500 |
| N3—H3A | 0.9100 | C3—H3 | 0.9500 |
| C1—C6 | 1.367 (13) | C5—H5 | 0.9500 |
| C1—C2 | 1.397 (10) | C6—H6 | 0.9500 |
| C2—C3 | 1.398 (10) | C11—H11 | 0.9500 |
| C3—C4 | 1.373 (12) | C12—H12 | 0.9500 |
| C4—C5 | 1.402 (10) | C13—H13 | 0.9500 |
| C4—C7 | 1.518 (10) | C14—H14 | 0.9500 |
| C5—C6 | 1.383 (10) | ||
| N2—N1—C7 | 118.0 (7) | N3—C10—C15 | 109.1 (6) |
| N1—N2—C8 | 113.0 (6) | C11—C10—C15 | 123.0 (7) |
| C9—N3—C10 | 109.6 (6) | N3—C10—C11 | 127.9 (7) |
| C7—N1—H1 | 132 (2) | C10—C11—C12 | 117.2 (7) |
| N2—N1—H1 | 110 (2) | C11—C12—C13 | 120.9 (6) |
| C9—N3—H3A | 129.00 | C12—C13—C14 | 121.9 (7) |
| C10—N3—H3A | 120.00 | C13—C14—C15 | 117.2 (7) |
| Cl1—C1—C6 | 119.7 (5) | C8—C15—C14 | 133.1 (7) |
| C2—C1—C6 | 122.7 (6) | C10—C15—C14 | 119.9 (6) |
| Cl1—C1—C2 | 117.5 (6) | C8—C15—C10 | 106.9 (6) |
| C1—C2—C3 | 117.5 (7) | C1—C2—H2 | 121.00 |
| C2—C3—C4 | 121.0 (7) | C3—C2—H2 | 121.00 |
| C3—C4—C5 | 119.6 (6) | C2—C3—H3 | 119.00 |
| C3—C4—C7 | 125.1 (6) | C4—C3—H3 | 120.00 |
| C5—C4—C7 | 115.3 (7) | C4—C5—H5 | 120.00 |
| C4—C5—C6 | 120.4 (8) | C6—C5—H5 | 120.00 |
| C1—C6—C5 | 118.7 (7) | C1—C6—H6 | 121.00 |
| O1—C7—C4 | 123.3 (6) | C5—C6—H6 | 121.00 |
| N1—C7—C4 | 112.6 (7) | C10—C11—H11 | 121.00 |
| O1—C7—N1 | 124.1 (6) | C12—C11—H11 | 122.00 |
| N2—C8—C9 | 127.7 (6) | C11—C12—H12 | 120.00 |
| N2—C8—C15 | 125.2 (7) | C13—C12—H12 | 120.00 |
| C9—C8—C15 | 107.0 (6) | C12—C13—H13 | 119.00 |
| N3—C9—C8 | 107.3 (6) | C14—C13—H13 | 119.00 |
| O2—C9—N3 | 125.0 (7) | C13—C14—H14 | 121.00 |
| O2—C9—C8 | 127.7 (6) | C15—C14—H14 | 122.00 |
| C7—N1—N2—C8 | −177.0 (7) | C5—C4—C7—N1 | 170.3 (7) |
| N2—N1—C7—O1 | 0.7 (12) | C4—C5—C6—C1 | −1.5 (13) |
| N2—N1—C7—C4 | −176.6 (6) | N2—C8—C9—O2 | −1.7 (14) |
| N1—N2—C8—C9 | 2.1 (11) | N2—C8—C9—N3 | 179.7 (7) |
| N1—N2—C8—C15 | −178.5 (7) | C15—C8—C9—O2 | 178.8 (8) |
| C10—N3—C9—O2 | 179.9 (7) | C15—C8—C9—N3 | 0.1 (8) |
| C10—N3—C9—C8 | −1.4 (8) | N2—C8—C15—C10 | −178.3 (7) |
| C9—N3—C10—C11 | 179.7 (8) | N2—C8—C15—C14 | −1.6 (14) |
| C9—N3—C10—C15 | 2.2 (9) | C9—C8—C15—C10 | 1.2 (8) |
| Cl1—C1—C2—C3 | −177.9 (6) | C9—C8—C15—C14 | 177.9 (8) |
| C6—C1—C2—C3 | −0.2 (12) | N3—C10—C11—C12 | −179.6 (7) |
| Cl1—C1—C6—C5 | 177.9 (7) | C15—C10—C11—C12 | −2.4 (12) |
| C2—C1—C6—C5 | 0.3 (13) | N3—C10—C15—C8 | −2.1 (8) |
| C1—C2—C3—C4 | 1.3 (12) | N3—C10—C15—C14 | −179.3 (7) |
| C2—C3—C4—C5 | −2.5 (12) | C11—C10—C15—C8 | −179.7 (7) |
| C2—C3—C4—C7 | 177.8 (8) | C11—C10—C15—C14 | 3.1 (12) |
| C3—C4—C5—C6 | 2.6 (12) | C10—C11—C12—C13 | 0.7 (12) |
| C7—C4—C5—C6 | −177.7 (8) | C11—C12—C13—C14 | 0.4 (12) |
| C3—C4—C7—O1 | 172.7 (8) | C12—C13—C14—C15 | 0.2 (12) |
| C3—C4—C7—N1 | −10.0 (11) | C13—C14—C15—C8 | −178.2 (8) |
| C5—C4—C7—O1 | −7.0 (12) | C13—C14—C15—C10 | −1.9 (11) |
| H··· | ||||
| N1—H1···O2 | 0.90 (5) | 1.87 (6) | 2.685 (9) | 151 (4) |
| N3—H3 | 0.91 | 1.98 | 2.798 (8) | 149 |
| C11—H11···O1i | 0.95 | 2.55 | 3.218 (10) | 128 |
| C14—H14···O2ii | 0.95 | 2.29 | 3.233 (9) | 172 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O2 | 0.90 (5) | 1.87 (6) | 2.685 (9) | 151 (4) |
| N3—H3 | 0.91 | 1.98 | 2.798 (8) | 149 |
| C11—H11⋯O1i | 0.95 | 2.55 | 3.218 (10) | 128 |
| C14—H14⋯O2ii | 0.95 | 2.29 | 3.233 (9) | 172 |
Symmetry codes: (i) ; (ii) .