| Literature DB >> 24523896 |
Bin Liang1, Yang Guo2, Yunhui Li3, Hong Kong4.
Abstract
BACKGROUND: A number of observational studies have been conducted to investigate the association of IL-10 gene polymorphisms with tuberculosis (TB) susceptibility. However, the results of different studies were inconsistent. The aim of this study was to investigate the relationship between IL-10 -1082G/A, -819T/C, and -592A/C polymorphisms and TB risk by meta-analysis.Entities:
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Year: 2014 PMID: 24523896 PMCID: PMC3921162 DOI: 10.1371/journal.pone.0088448
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow diagram of the literature search and trial selection process.
Baseline characteristics of the 31 eligible studies for the analysis of IL-10 polymorphism.
| Studies | Year | Country | Ethnicity | Source of controls | Sample size | SNP studied | Genotyping method | HWE |
| Wu F | 2008 | China | Asian | HB | 61/122 | -1082G/A, -819T/C, -592A/C | PCR-RFLP | 0.379, 0.125, 0.125 |
| Scola A | 2003 | Italy | European | PB | 45/114 | -1082G/A | ARMS-PCR | <0.001 |
| Selvaraj P | 2008 | India | Asian | PB | 155/183 | -1082G/A, -819T/C | PCR-RFLP | 0.204, 0.174 |
| Sharada RS | 2012 | India | Asian | HB | 104/102 | -1082G/A | ARMS-PCR | 0.057 |
| Bellamy R | 1998 | Gambia | African | HB | 401/408 | -1082G/A, -819T/C, -592A/C | PCR-SSP | 0.824, 0.779, 0.779 |
| Oral HB | 2006 | Turkey | European | HB | 81/50 | -1082G/A, -819T/C, -592A/C | PCR-SSP | 0.060, 0.320, 0.320 |
| Ben-Selma W | 2011 | Tunisian | African | HB | 131/95 | -1082G/A, -819T/C, -592A/C | PCR-RFLP | 0.020, 0.957, 0.957 |
| Heno MI | 2006 | Colombia | American | HB | 190/135 | -1082G/A, -819T/C, -592A/C | PCR-SSP | 0.674, 0.410, 0.518 |
| Garcia-Elorriaga G | 2006 | Mexico | American | HB | 77/60 | -1082G/A, -592A/C | Taqman | 0.728, <0.001 |
| Ates O | 2008 | Turkey | Asian | HB | 128/80 | -1082G/A, -819T/C, -592A/C | ARMS-PCR | 0.978, 0.819, 0.819 |
| Delgado JC | 2002 | Cambodian | Asian | HB | 356/106 | -1082G/A, | PCR-RFLP | <0.001 |
| Ulger M | 2013 | Turkey | European | HB | 84/110 | -1082G/A | PCR-RFLP | <0.001 |
| Shin HD | 2005 | Korea | Asian | HB | 449/851 | -1082G/A, -592A/C | MAPA | 0.168, 0.631, |
| Mosaad YM | 2010 | Egypt | African | HB | 110/118 | -1082G/A | ARMS-PCR | <0.001 |
| Oh JH | 2007 | Korea | Asian | HB | 145/117 | -1082G/A | ARMS-PCR | 0.612 |
| Liang L | 2011 | China | Asian | HB | 235/78 | -1082G/A, -819T/C, -592A/C | SNaPshot assay | 0.589, 0.253, 0.253 |
| Ansari A | 2009 | Pakistan | Asian | PB | 178/376 | -1082G/A | ARMS-PCR | <0.001 |
| Thye T | 2009 | Ghana | African | PB | 2010/2346 | -1082G/A, -819T/C, -592A/C | FRET | 0.542, 0.380, 0.551 |
| Ansari A | 2011 | Pakistan | Asian | PB | 102/166 | -1082G/A | ARMS-PCR | <0.001 |
| Lopez-Maderueyo D | 2003 | Spain | European | HB | 113/100 | -1082G/A | ARMS-PCR | 0.949 |
| Meenakshi P | 2013 | India | Asian | HB | 100/100 | -1082G/A | PCR-RFLP | 0.058 |
| Mhmoud N | 2013 | Sudan | Asian | HB | 191/206 | -819T/C, -592A/C | PCR-RFLP | <0.001, <0.001 |
| Mei | 2012 | China | Asian | HB | 169/156 | -592A/C | PCR-RFLP | 0.622 |
| Ma Z | 2007 | China | Asian | HB | 40/40 | -1082G/A | PCR-SSP | 0.292 |
| Yang H | 2010 | China | Asian | HB | 198/200 | -1082G/A | PCR-SSP | 0.253 |
| Liu XX | 2009 | China | Asian | HB | 141/135 | -1082G/A, -819T/C | PCR-RFLP | <0.001, <0.001 |
| Trajkov D | 2009 | Macedonia | European | PB | 75/299 | -1082G/A, -819T/C, -592A/C | PCR-SSP | <0.001, 0.879, 0.403 |
| Fitness J | 2004 | Malawi | African | HB | 210/705 | -1082G/A, -819T/C, -592A/C | ARMS-PCR | 0.524, 0.062, 0.035 |
| Amirzargar AA | 2006 | Iran | Asian | HB | 41/123 | -1082G/A, -819T/C, -592A/C | PCR-SSP | <0.001, 0.671, 0.671 |
| Taype CA | 2010 | Peru | American | HB | 626/513 | -1082G/A, -592A/C | Taqman PCR | 0.142, 0.055 |
| Prabhu Anand S | 2007 | India | Asian | HB | 132/143 | -1082G/A | PCR-RFLP | 0.123 |
PB, population-based controls, HB, hospital-based controls. HWE, Hardy–Weinberg equilibrium. PCR, polymerase chain reaction; SSP, sequence-specific primers; ARMS, amplification refractory mutation system; RFLP, restriction fragment length polymorphism; FRET, fluorescence resonance energy transfer. MAPA, multiplex automated primer extension analysis.
Determination of the genetic effects of polymorphisms on TB and subgroup analysis.
| Allele model | Dominant model | Recessive model | Homozygous model | Heterozygous model | |||||||
| OR [95% CI] |
| OR [95% CI] |
| OR [95% CI] |
| OR [95% CI] |
| OR [95% CI] |
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| overall | 0.97 [0.79–1.20] | 0.81 | 0.95 [0.68–1.34] | 0.79 | 0.92 [0.75–1.14] | 0.46 | 0.90 [0.61–1.33] | 0.59 | 0.99 [0.72–1.36] | 0.96 | |
| Asian | 1.15 [0.89–1.47] | 0.27 | 1.48 [0.69–3.17] | 0.32 | 1.24 [0.91–1.69] | 0.17 | 1.65 [0.74–3.72] | 0.22 | 1.39 [0.67–2.90] | 0.38 | |
| European | 0.75 [0.56–1.01] | 0.05 | 0.57 [0.37–0.89] | 0.01 | 0.67 [0.36–1.26] | 0.21 | 0.53 [0.26–1.08] | 0.08 | 0.60 [0.39–0.93] | 0.02 | |
| African | 1.13 [0.62–2.07] | 0.69 | 1.03 [0.85–1.25] | 0.78 | 0.76 [0.53–1.09] | 0.13 | 0.84 [0.56–1.24] | 0.37 | 1.09 [0.90–1.32] | 0.40 | |
| American | 0.58 [0.32–1.06] | 0.07 | 0.39 [0.27–0.57] | <0.01 | 0.53 [0.20–1.41] | 0.20 | 0.31 [0.13–0.77] | 0.01 | 0.46 [0.32–0.68] | <0.01 | |
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| overall | 0.98 [0.92–1.05] | 0.59 | 1.03 [0.85–1.25] | 0.77 | 0.87 [0.73–1.05] | 0.15 | 0.98 [0.85–1.12] | 0.73 | 1.09 [0.85–1.41] | 0.49 | |
| Asian | 0.83 [0.72–0.96] | 0.01 | 0.94 [0.57–1.54] | 0.80 | 0.60 [0.40–0.90] | 0.01 | 0.63 [0.45–0.88] | 0.006 | 1.10 [0.57–2.10] | 0.78 | |
| European | 1.09 [0.84–1.41] | 0.51 | 1.27 [0.70–2.31] | 0.43 | 1.08 [0.75–1.56] | 0.67 | 1.33 [0.71–2.49] | 0.38 | 1.19 [0.63–2.24] | 0.59 | |
| African | 1.02 [0.94–1.10] | 0.62 | 1.08 [0.94–1.25] | 0.27 | 0.99 [0.88–1.11] | 0.88 | 1.06 [0.90–1.25] | 0.46 | 1.09 [0.93–1.27] | 0.29 | |
| American | 1.00 [0.72–1.38] | 1.00 | 0.89 [0.48–1.64] | 0.71 | 1.06 [0.68–1.66] | 0.79 | 0.94 [0.49–1.81] | 0.85 | 0.85 [0.44–1.63] | 0.62 | |
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| overall | 0.99 [0.83–1.18] | 0.90 | 0.89 [0.74–1.08] | 0.25 | 0.92 [0.78–1.09] | 0.32 | 0.87 [0.68–1.11] | 0.27 | 0.90 [0.76–1.07] | 0.24 | |
| Asian | 0.69 [0.57–0.85] | <0.01 | 0.65 [0.49–0.85] | 0.002 | 0.62 [0.49–0.79] | <0.01 | 0.49 [0.34–0.71] | <0.01 | 0.70 [0.55–0.89] | <0.01 | |
| European | 1.19 [0.92–1.54] | 0.18 | 1.47 [0.81–2.66] | 0.20 | 1.18 [0.85–1.65] | 0.32 | 1.57 [0.85–2.90] | 0.15 | 1.34 [0.72–2.52] | 0.36 | |
| African | 1.01 [0.92–1.10] | 0.90 | 1.10 [0.94–1.30] | 0.24 | 0.95 [0.83–1.08] | 0.45 | 1.06 [0.88–1.27] | 0.54 | 1.14 [0.96–1.35] | 0.14 | |
| American | 1.56 [1.08–2.27] | 0.02 | 1.04 [0.79–1.36] | 0.79 | 1.24 [0.92–1.69] | 0.16 | 1.26 [0.94–1.69] | 0.13 | 0.86 [0.64–1.15] | 0.30 | |
Figure 2Meta-analysis with a random-effect model for the ORs of tuberculosis risk associated with IL-10 -1082G/A polymorphism in dominant genetic model comparison.
Figure 3Meta-analysis with a random-effect model for the ORs of tuberculosis risk associated with IL-10 -819T/C polymorphism in dominant genetic model comparison.
Figure 4Meta-analysis with a random-effect model for the ORs of tuberculosis risk associated with IL-10 -592A/C polymorphism in dominant genetic model comparison.
Figure 5Funnel plot for publication bias of the meta-analysis of tuberculosis risk and IL-10 polymorphisms in dominant genetic model comparison.
(a) IL-10 -1082G/A polymorphism, (b) IL-10 -819T/C polymorphism, (c) IL-10 -592A/C polymorphism.