Literature DB >> 24522230

Immunoglobulin G1 Fc domain motions: implications for Fc engineering.

Martin Frank1, Ross C Walker2, William N Lanzilotta3, James H Prestegard4, Adam W Barb5.   

Abstract

The fragment crystallizable (Fc) region links the key pathogen identification and destruction properties of immunoglobulin G (IgG). Pathogen opsonization positions Fcs to activate pro-inflammatory Fcγ receptors (FcγRs) on immune cells. The cellular response and committal to a damaging, though protective, immune response are tightly controlled at multiple levels. Control mechanisms are diverse and in many cases unclear, but one frequently suggested contribution originates in FcγR affinity being modulated through shifts in Fc conformational sampling. Here, we report a previously unseen IgG1 Fc conformation. This observation motivated an extensive molecular dynamics investigation of polypeptide and glycan motions that revealed greater amplitude of motion for the N-terminal Cγ2 domains and N-glycan than previously observed. Residues in the Cγ2/Cγ3 interface and disulfide-bonded hinge were identified as influencing the Cγ2 motion. Our results are consistent with a model of Fc that is structurally dynamic. Conformational states that are competent to bind immune-stimulating FcγRs interconverted with Fc conformations distinct from those observed in FcγR complexes, which may represent a transient, nonbinding population.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  N-glycan; glycoprotein; molecular dynamics; x-ray crystallography

Mesh:

Substances:

Year:  2014        PMID: 24522230      PMCID: PMC4041121          DOI: 10.1016/j.jmb.2014.01.011

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  44 in total

1.  Convergent solutions to binding at a protein-protein interface.

Authors:  W L DeLano; M H Ultsch; A M de Vos; J A Wells
Journal:  Science       Date:  2000-02-18       Impact factor: 47.728

2.  Anti-inflammatory activity of immunoglobulin G resulting from Fc sialylation.

Authors:  Yoshikatsu Kaneko; Falk Nimmerjahn; Jeffrey V Ravetch
Journal:  Science       Date:  2006-08-04       Impact factor: 47.728

3.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

4.  Version 1.2 of the Crystallography and NMR system.

Authors:  Axel T Brunger
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

5.  Glycoform-dependent conformational alteration of the Fc region of human immunoglobulin G1 as revealed by NMR spectroscopy.

Authors:  Yoshiki Yamaguchi; Mamiko Nishimura; Mayumi Nagano; Hirokazu Yagi; Hiroaki Sasakawa; Kazuhisa Uchida; Kenya Shitara; Koichi Kato
Journal:  Biochim Biophys Acta       Date:  2005-10-26

Review 6.  Intravenous immunoglobulin therapy: how does IgG modulate the immune system?

Authors:  Inessa Schwab; Falk Nimmerjahn
Journal:  Nat Rev Immunol       Date:  2013-02-15       Impact factor: 53.106

7.  IgG2 Fc structure and the dynamic features of the IgG CH2-CH3 interface.

Authors:  Alexey Teplyakov; Yonghong Zhao; Thomas J Malia; Galina Obmolova; Gary L Gilliland
Journal:  Mol Immunol       Date:  2013-04-28       Impact factor: 4.407

Review 8.  The impact of glycosylation on the biological function and structure of human immunoglobulins.

Authors:  James N Arnold; Mark R Wormald; Robert B Sim; Pauline M Rudd; Raymond A Dwek
Journal:  Annu Rev Immunol       Date:  2007       Impact factor: 28.527

9.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 10.  The N-linked sugar chains of human immunoglobulin G: their unique pattern, and their functional roles.

Authors:  Akira Kobata
Journal:  Biochim Biophys Acta       Date:  2007-07-04
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  36 in total

1.  Conformational Plasticity of the Immunoglobulin Fc Domain in Solution.

Authors:  Soumya G Remesh; Anthony A Armstrong; Andrew D Mahan; Jinquan Luo; Michal Hammel
Journal:  Structure       Date:  2018-05-03       Impact factor: 5.006

2.  From Rhesus macaque to human: structural evolutionary pathways for immunoglobulin G subclasses.

Authors:  William David Tolbert; Ganesh Prasad Subedi; Neelakshi Gohain; George Kenneth Lewis; Kashyap Rajesh Patel; Adam Wesley Barb; Marzena Pazgier
Journal:  MAbs       Date:  2019-04-02       Impact factor: 5.857

3.  Fc Engineering of Human IgG1 for Altered Binding to the Neonatal Fc Receptor Affects Fc Effector Functions.

Authors:  Algirdas Grevys; Malin Bern; Stian Foss; Diane Bryant Bratlie; Anders Moen; Kristin Støen Gunnarsen; Audun Aase; Terje Einar Michaelsen; Inger Sandlie; Jan Terje Andersen
Journal:  J Immunol       Date:  2015-04-22       Impact factor: 5.422

4.  Processing of complex N-glycans in IgG Fc-region is affected by core fucosylation.

Authors:  Alexandra Castilho; Clemens Gruber; Andreas Thader; Chris Oostenbrink; Maria Pechlaner; Herta Steinkellner; Friedrich Altmann
Journal:  MAbs       Date:  2015       Impact factor: 5.857

5.  The immunoglobulin G1 N-glycan composition affects binding to each low affinity Fc γ receptor.

Authors:  Ganesh P Subedi; Adam W Barb
Journal:  MAbs       Date:  2016-08-05       Impact factor: 5.857

Review 6.  Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.

Authors:  Robert J Woods
Journal:  Chem Rev       Date:  2018-08-09       Impact factor: 60.622

Review 7.  Biophysical characterization of dynamic structures of immunoglobulin G.

Authors:  Saeko Yanaka; Rina Yogo; Koichi Kato
Journal:  Biophys Rev       Date:  2020-05-15

8.  The Structural Role of Antibody N-Glycosylation in Receptor Interactions.

Authors:  Ganesh P Subedi; Adam W Barb
Journal:  Structure       Date:  2015-07-23       Impact factor: 5.006

9.  Stabilizing the CH2 Domain of an Antibody by Engineering in an Enhanced Aromatic Sequon.

Authors:  Wentao Chen; Leopold Kong; Stephen Connelly; Julia M Dendle; Yu Liu; Ian A Wilson; Evan T Powers; Jeffery W Kelly
Journal:  ACS Chem Biol       Date:  2016-04-29       Impact factor: 5.100

10.  Structural characterization of anti-inflammatory immunoglobulin G Fc proteins.

Authors:  Alysia A Ahmed; John Giddens; Andrew Pincetic; Joseph V Lomino; Jeffrey V Ravetch; Lai-Xi Wang; Pamela J Bjorkman
Journal:  J Mol Biol       Date:  2014-07-15       Impact factor: 5.469

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