Literature DB >> 24510274

A decadentate Gd(III)-coordinating paramagnetic cosolvent for protein relaxation enhancement measurement.

Xin-Hua Gu1, Zhou Gong, Da-Chuan Guo, Wei-Ping Zhang, Chun Tang.   

Abstract

Solvent paramagnetic relaxation enhancement (sPRE) arises from random collisions between paramagnetic cosolvent and protein of interest. The sPRE can be readily measured, affording protein structure information. However, lack of an inert cosolvent probe may yield sPRE values that are not consistent with protein structure. Here we synthesized a new sPRE probe, triethylenetetraamine hexaacetate trimethylamide gadolinium, or Gd(III)-TTHA-TMA. With a total of 10 coordination sites, this paramagnetic cosovlent eliminates an inner-sphere water molecule that can otherwise transfer relaxation to protein through exchange. With the metal ion centered, the new probe is largely spherical with a radius of 4.0 Å, permitting accurate back calculation of sPRE. The effectiveness Gd(III)-TTHA-TMA as a sPRE probe was demonstrated on three well-studied protein systems.

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Year:  2014        PMID: 24510274     DOI: 10.1007/s10858-014-9817-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  28 in total

1.  Requirements on paramagnetic relaxation enhancement data for membrane protein structure determination by NMR.

Authors:  Daniel Gottstein; Sina Reckel; Volker Dötsch; Peter Güntert
Journal:  Structure       Date:  2012-05-03       Impact factor: 5.006

2.  Use of relaxation enhancements in a paramagnetic environment for the structure determination of proteins using NMR spectroscopy.

Authors:  Tobias Madl; Wolfgang Bermel; Klaus Zangger
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

3.  Structural analysis of large protein complexes using solvent paramagnetic relaxation enhancements.

Authors:  Tobias Madl; Thomas Güttler; Dirk Görlich; Michael Sattler
Journal:  Angew Chem Int Ed Engl       Date:  2011-03-25       Impact factor: 15.336

4.  NMR identification of protein surfaces using paramagnetic probes.

Authors:  A M Petros; L Mueller; K D Kopple
Journal:  Biochemistry       Date:  1990-10-30       Impact factor: 3.162

5.  Identification of protein surfaces by NMR measurements with a pramagnetic Gd(III) chelate.

Authors:  Guido Pintacuda; Gottfried Otting
Journal:  J Am Chem Soc       Date:  2002-01-23       Impact factor: 15.419

6.  Distance information for disordered proteins from NMR and ESR measurements using paramagnetic spin labels.

Authors:  David Eliezer
Journal:  Methods Mol Biol       Date:  2012

Review 7.  Expanding the utility of NMR restraints with paramagnetic compounds: background and practical aspects.

Authors:  Julia Koehler; Jens Meiler
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-05-27       Impact factor: 9.795

8.  Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching.

Authors:  Marcelo J Berardi; William M Shih; Stephen C Harrison; James J Chou
Journal:  Nature       Date:  2011-07-24       Impact factor: 49.962

9.  O2 penetration and proton burial depth in proteins: applicability to fold family recognition.

Authors:  Griselda Hernández; Ching-Ling Teng; Robert G Bryant; David M LeMaster
Journal:  J Am Chem Soc       Date:  2002-04-24       Impact factor: 15.419

Review 10.  Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.

Authors:  G Marius Clore; Junji Iwahara
Journal:  Chem Rev       Date:  2009-09       Impact factor: 60.622

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  6 in total

1.  Theory and practice of using solvent paramagnetic relaxation enhancement to characterize protein conformational dynamics.

Authors:  Zhou Gong; Charles D Schwieters; Chun Tang
Journal:  Methods       Date:  2018-04-12       Impact factor: 3.608

Review 2.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

Review 3.  NMR-based investigations into target DNA search processes of proteins.

Authors:  Junji Iwahara; Levani Zandarashvili; Catherine A Kemme; Alexandre Esadze
Journal:  Methods       Date:  2018-05-10       Impact factor: 3.608

4.  Characterization of Protein-Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements.

Authors:  Carl Öster; Simone Kosol; Christoph Hartlmüller; Jonathan M Lamley; Dinu Iuga; Andres Oss; Mai-Liis Org; Kalju Vanatalu; Ago Samoson; Tobias Madl; Józef R Lewandowski
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

5.  NMR characterization of solvent accessibility and transient structure in intrinsically disordered proteins.

Authors:  Christoph Hartlmüller; Emil Spreitzer; Christoph Göbl; Fabio Falsone; Tobias Madl
Journal:  J Biomol NMR       Date:  2019-07-11       Impact factor: 2.835

Review 6.  Recent Developments in Data-Assisted Modeling of Flexible Proteins.

Authors:  Cezary Czaplewski; Zhou Gong; Emilia A Lubecka; Kai Xue; Chun Tang; Adam Liwo
Journal:  Front Mol Biosci       Date:  2021-12-24
  6 in total

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