Literature DB >> 24508568

Preparation, crystallization, and preliminary crystallographic analysis of wild-type and mutant human TREM-2 ectodomains linked to neurodegenerative and inflammatory diseases.

Daniel L Kober1, Kelsey M Wanhainen2, Britney M Johnson3, David T Randolph2, Michael J Holtzman4, Tom J Brett5.   

Abstract

TREM-2 (triggering receptor expressed on myeloid cells-2) is an innate immune receptor expressed on dendritic cells, macrophages, osteoclasts, and microglia. Recent genetic studies have reported the occurrence of point mutations in TREM-2 that correlate with a dramatically increased risk for the development of neurodegenerative diseases, including Alzheimer's disease, frontotemporal dementia, and Parkinson's disease. Structural and biophysical studies of wild-type and mutant TREM-2 ectodomains are required to understand the functional consequences of these mutations. In order to facilitate these studies, we undertook the production and crystallization of these proteins. Here we demonstrate that, unlike many single Ig domain proteins, TREM-2 could not be readily refolded from bacterially-expressed inclusion bodies. Instead, we developed a mammalian-cell based expression system for the successful production of wild-type and mutant TREM-2 proteins in milligram quantities and a single-chromatography-step purification scheme that produced diffraction-quality crystals. These crystals diffract to a resolution of 3.3 Å and produce data sufficient for structure determination. We describe herein the procedures to produce wild-type and mutant human TREM-2 Ig domains in sufficient quantities for structural and biophysical studies. Such studies are crucial to understand the functional consequences of TREM-2 point mutations linked to the development of neurodegenerative diseases and, ultimately, to develop patient-specific molecular therapies to treat them.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Alzheimer’s disease; Crystallography; Inflammation; Innate immunity; Neurodegenerative disease; Parkinson’s disease; Receptor

Mesh:

Substances:

Year:  2014        PMID: 24508568      PMCID: PMC3980731          DOI: 10.1016/j.pep.2014.01.015

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  44 in total

1.  Characterizing a crystal from an initial native dataset.

Authors:  Michael R Sawaya
Journal:  Methods Mol Biol       Date:  2007

2.  The crystal structure of the extracellular domain of the inhibitor receptor expressed on myeloid cells IREM-1.

Authors:  José Antonio Márquez; Elena Galfré; Florine Dupeux; David Flot; Oscar Moran; Nazzareno Dimasi
Journal:  J Mol Biol       Date:  2007-01-10       Impact factor: 5.469

3.  The structure of the extracellular domain of triggering receptor expressed on myeloid cells like transcript-1 and evidence for a naturally occurring soluble fragment.

Authors:  James L Gattis; A Valance Washington; Maia M Chisholm; Laura Quigley; Agnieszka Szyk; Daniel W McVicar; Jacek Lubkowski
Journal:  J Biol Chem       Date:  2006-02-27       Impact factor: 5.157

4.  Plexin-A1 and its interaction with DAP12 in immune responses and bone homeostasis.

Authors:  Noriko Takegahara; Hyota Takamatsu; Toshihiko Toyofuku; Tohru Tsujimura; Tatsusada Okuno; Kazunori Yukawa; Masayuki Mizui; Midori Yamamoto; Durbaka V R Prasad; Kazuhiro Suzuki; Masaru Ishii; Kenta Terai; Masayuki Moriya; Yuji Nakatsuji; Saburo Sakoda; Shintaro Sato; Shizuo Akira; Kiyoshi Takeda; Masanori Inui; Toshiyuki Takai; Masahito Ikawa; Masaru Okabe; Atsushi Kumanogoh; Hitoshi Kikutani
Journal:  Nat Cell Biol       Date:  2006-05-21       Impact factor: 28.824

Review 5.  Structure, expression pattern and biological activity of molecular complex TREM-2/DAP12.

Authors:  Agnieszka Paradowska-Gorycka; Monika Jurkowska
Journal:  Hum Immunol       Date:  2013-02-28       Impact factor: 2.850

6.  Variant of TREM2 associated with the risk of Alzheimer's disease.

Authors:  Thorlakur Jonsson; Hreinn Stefansson; Stacy Steinberg; Ingileif Jonsdottir; Palmi V Jonsson; Jon Snaedal; Sigurbjorn Bjornsson; Johanna Huttenlocher; Allan I Levey; James J Lah; Dan Rujescu; Harald Hampel; Ina Giegling; Ole A Andreassen; Knut Engedal; Ingun Ulstein; Srdjan Djurovic; Carla Ibrahim-Verbaas; Albert Hofman; M Arfan Ikram; Cornelia M van Duijn; Unnur Thorsteinsdottir; Augustine Kong; Kari Stefansson
Journal:  N Engl J Med       Date:  2012-11-14       Impact factor: 91.245

7.  Identification of soluble TREM-2 in the cerebrospinal fluid and its association with multiple sclerosis and CNS inflammation.

Authors:  Laura Piccio; Cecilia Buonsanti; Marina Cella; Ilaria Tassi; Robert E Schmidt; Chiara Fenoglio; John Rinker; Robert T Naismith; Paola Panina-Bordignon; Nadia Passini; Daniela Galimberti; Elio Scarpini; Marco Colonna; Anne H Cross
Journal:  Brain       Date:  2008-09-12       Impact factor: 13.501

8.  Heterozygous TREM2 mutations in frontotemporal dementia.

Authors:  Barbara Borroni; Francesca Ferrari; Daniela Galimberti; Benedetta Nacmias; Cinzia Barone; Silvia Bagnoli; Chiara Fenoglio; Irene Piaceri; Silvana Archetti; Cristian Bonvicini; Massimo Gennarelli; Marinella Turla; Elio Scarpini; Sandro Sorbi; Alessandro Padovani
Journal:  Neurobiol Aging       Date:  2013-10-16       Impact factor: 4.673

9.  TREM-2 (triggering receptor expressed on myeloid cells 2) is a phagocytic receptor for bacteria.

Authors:  Elsa-Noah N'Diaye; Catherine S Branda; Steven S Branda; Lisette Nevarez; Marco Colonna; Clifford Lowell; Jessica A Hamerman; William E Seaman
Journal:  J Cell Biol       Date:  2009-01-26       Impact factor: 10.539

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  8 in total

1.  Molecular basis for the loss-of-function effects of the Alzheimer's disease-associated R47H variant of the immune receptor TREM2.

Authors:  Athena Sudom; Santosh Talreja; Jean Danao; Eric Bragg; Rob Kegel; Xiaoshan Min; Jason Richardson; Zhongqi Zhang; Nikolai Sharkov; Edoardo Marcora; Steve Thibault; Jodi Bradley; Steve Wood; Ai-Ching Lim; Hang Chen; Songli Wang; Ian N Foltz; Shilpa Sambashivan; Zhulun Wang
Journal:  J Biol Chem       Date:  2018-05-24       Impact factor: 5.157

2.  Efficient Mammalian Cell Expression and Single-step Purification of Extracellular Glycoproteins for Crystallization.

Authors:  Daniel L Kober; Zeynep Yurtsever; Thomas J Brett
Journal:  J Vis Exp       Date:  2015-12-23       Impact factor: 1.355

3.  Sphingosine-1-phosphate, a novel TREM2 ligand, promotes microglial phagocytosis to protect against ischemic brain injury.

Authors:  Tengfei Xue; Juan Ji; Yuqin Sun; Xinxin Huang; Zhenyu Cai; Jin Yang; Wei Guo; Ruobing Guo; Hong Cheng; Xiulan Sun
Journal:  Acta Pharm Sin B       Date:  2021-10-22       Impact factor: 14.903

4.  TREM-2 promotes macrophage survival and lung disease after respiratory viral infection.

Authors:  Kangyun Wu; Derek E Byers; Xiaohua Jin; Eugene Agapov; Jennifer Alexander-Brett; Anand C Patel; Marina Cella; Susan Gilfilan; Marco Colonna; Daniel L Kober; Tom J Brett; Michael J Holtzman
Journal:  J Exp Med       Date:  2015-04-20       Impact factor: 14.307

5.  Neurodegenerative disease mutations in TREM2 reveal a functional surface and distinct loss-of-function mechanisms.

Authors:  Daniel L Kober; Jennifer M Alexander-Brett; Celeste M Karch; Carlos Cruchaga; Marco Colonna; Michael J Holtzman; Thomas J Brett
Journal:  Elife       Date:  2016-12-20       Impact factor: 8.140

6.  Neurodegenerative Disease-Associated Variants in TREM2 Destabilize the Apical Ligand-Binding Region of the Immunoglobulin Domain.

Authors:  Hunter B Dean; Erik D Roberson; Yuhua Song
Journal:  Front Neurol       Date:  2019-11-26       Impact factor: 4.003

7.  Targeting TREM2 for Parkinson's Disease: Where to Go?

Authors:  Xiao-Xian Li; Feng Zhang
Journal:  Front Immunol       Date:  2021-12-24       Impact factor: 7.561

Review 8.  TREM2 in Neurodegenerative Diseases.

Authors:  Taylor R Jay; Victoria E von Saucken; Gary E Landreth
Journal:  Mol Neurodegener       Date:  2017-08-02       Impact factor: 14.195

  8 in total

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