Literature DB >> 17172762

Characterizing a crystal from an initial native dataset.

Michael R Sawaya1.   

Abstract

Methods are presented for characterizing a crystal given an initial X-ray diffraction dataset. These methods can facilitate the structure determination process and illuminate the oligomeric state and symmetry of your molecule before the crystal structure is determined. Specifically, these methods include (1) calculation of Matthews coefficient to estimate the number of molecules in the asymmetric unit; (2) calculation and interpretation of a self-rotation function to evaluate the point group symmetry of the crystallized oligomer, if contained in the crystal; (3) calculation and interpretation of a native Patterson map to evaluate the presence of noncrystallographic translational symmetry; and (4) calculation of statistics to evaluate the possibility of merohedral twinning in a crystal.

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Year:  2007        PMID: 17172762     DOI: 10.1385/1-59745-266-1:95

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of YvoA from Bacillus subtilis.

Authors:  Marcus Resch; Heide Marie Roth; Mathias Kottmair; Madhumati Sevvana; Ralph Bertram; Fritz Titgemeyer; Yves A Muller
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-26

2.  Crystallization and preliminary X-ray diffraction analysis of YhbJ from Escherichia coli, a key protein involved in the GlmYZ sRNA regulatory cascade.

Authors:  Marcus Resch; Yvonne Göpel; Boris Görke; Ralf Ficner
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-01-30

3.  Preparation, crystallization, and preliminary crystallographic analysis of wild-type and mutant human TREM-2 ectodomains linked to neurodegenerative and inflammatory diseases.

Authors:  Daniel L Kober; Kelsey M Wanhainen; Britney M Johnson; David T Randolph; Michael J Holtzman; Tom J Brett
Journal:  Protein Expr Purif       Date:  2014-02-07       Impact factor: 1.650

4.  X-ray diffraction studies on merohedrally twinned Δ1-62NtNBCe1-A crystals of the sodium/bicarbonate cotransporter.

Authors:  Harindarpal S Gill; Lauren Dutcher; Walter F Boron; Samir Patel; Lisa M Guay-Woodford
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-06-28

5.  A general method for directly phasing diffraction data from high-solvent-content protein crystals.

Authors:  Richard Lawrence Kingston; Rick P Millane
Journal:  IUCrJ       Date:  2022-08-13       Impact factor: 5.588

6.  Structural studies of a bacterial tRNA(HIS) guanylyltransferase (Thg1)-like protein, with nucleotide in the activation and nucleotidyl transfer sites.

Authors:  Samantha J Hyde; Bhalchandra S Rao; Brian E Eckenroth; Jane E Jackman; Sylvie Doublié
Journal:  PLoS One       Date:  2013-07-03       Impact factor: 3.240

  6 in total

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