Literature DB >> 24505732

Fast, sequence adaptive parcellation of brain MR using parametric models.

Oula Puonti1, Juan Eugenio Iglesias2, Koen Van Leemput1.   

Abstract

In this paper we propose a method for whole brain parcellation using the type of generative parametric models typically used in tissue classification. Compared to the non-parametric, multi-atlas segmentation techniques that have become popular in recent years, our method obtains state-of-the-art segmentation performance in both cortical and subcortical structures, while retaining all the benefits of generative parametric models, including high computational speed, automatic adaptiveness to changes in image contrast when different scanner platforms and pulse sequences are used, and the ability to handle multi-contrast (vector-valued intensities) MR data. We have validated our method by comparing its segmentations to manual delineations both within and across scanner platforms and pulse sequences, and show preliminary results on multi-contrast test-retest scans, demonstrating the feasibility of the approach.

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Mesh:

Year:  2013        PMID: 24505732      PMCID: PMC3980956          DOI: 10.1007/978-3-642-40811-3_91

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  10 in total

1.  Automated model-based bias field correction of MR images of the brain.

Authors:  K Van Leemput; F Maes; D Vandermeulen; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  1999-10       Impact factor: 10.048

2.  Unified segmentation.

Authors:  John Ashburner; Karl J Friston
Journal:  Neuroimage       Date:  2005-04-01       Impact factor: 6.556

3.  Sequence-independent segmentation of magnetic resonance images.

Authors:  Bruce Fischl; David H Salat; André J W van der Kouwe; Nikos Makris; Florent Ségonne; Brian T Quinn; Anders M Dale
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

4.  Atlas renormalization for improved brain MR image segmentation across scanner platforms.

Authors:  Xiao Han; Bruce Fischl
Journal:  IEEE Trans Med Imaging       Date:  2007-04       Impact factor: 10.048

5.  An evaluation of four automatic methods of segmenting the subcortical structures in the brain.

Authors:  Kolawole Oluwole Babalola; Brian Patenaude; Paul Aljabar; Julia Schnabel; David Kennedy; William Crum; Stephen Smith; Tim Cootes; Mark Jenkinson; Daniel Rueckert
Journal:  Neuroimage       Date:  2009-05-20       Impact factor: 6.556

6.  Homeomorphic brain image segmentation with topological and statistical atlases.

Authors:  Pierre-Louis Bazin; Dzung L Pham
Journal:  Med Image Anal       Date:  2008-06-20       Impact factor: 8.545

7.  Cortical surface-based analysis. I. Segmentation and surface reconstruction.

Authors:  A M Dale; B Fischl; M I Sereno
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

8.  A generative model for image segmentation based on label fusion.

Authors:  Mert R Sabuncu; B T Thomas Yeo; Koen Van Leemput; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2010-06-17       Impact factor: 10.048

9.  Encoding probabilistic brain atlases using Bayesian inference.

Authors:  Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2008-12-09       Impact factor: 10.048

10.  Automatic anatomical brain MRI segmentation combining label propagation and decision fusion.

Authors:  Rolf A Heckemann; Joseph V Hajnal; Paul Aljabar; Daniel Rueckert; Alexander Hammers
Journal:  Neuroimage       Date:  2006-07-24       Impact factor: 6.556

  10 in total
  8 in total

1.  A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI.

Authors:  Juan Eugenio Iglesias; Jean C Augustinack; Khoa Nguyen; Christopher M Player; Allison Player; Michelle Wright; Nicole Roy; Matthew P Frosch; Ann C McKee; Lawrence L Wald; Bruce Fischl; Koen Van Leemput
Journal:  Neuroimage       Date:  2015-04-29       Impact factor: 6.556

2.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

3.  Bayesian segmentation of brainstem structures in MRI.

Authors:  Juan Eugenio Iglesias; Koen Van Leemput; Priyanka Bhatt; Christen Casillas; Shubir Dutt; Norbert Schuff; Diana Truran-Sacrey; Adam Boxer; Bruce Fischl
Journal:  Neuroimage       Date:  2015-03-14       Impact factor: 6.556

4.  Fast and sequence-adaptive whole-brain segmentation using parametric Bayesian modeling.

Authors:  Oula Puonti; Juan Eugenio Iglesias; Koen Van Leemput
Journal:  Neuroimage       Date:  2016-09-07       Impact factor: 6.556

5.  Automatic segmentation of the striatum and globus pallidus using MIST: Multimodal Image Segmentation Tool.

Authors:  Eelke Visser; Max C Keuken; Gwenaëlle Douaud; Veronique Gaura; Anne-Catherine Bachoud-Levi; Philippe Remy; Birte U Forstmann; Mark Jenkinson
Journal:  Neuroimage       Date:  2015-10-19       Impact factor: 6.556

6.  Automatic normative quantification of brain tissue volume to support the diagnosis of dementia: A clinical evaluation of diagnostic accuracy.

Authors:  Meike W Vernooij; Bas Jasperse; Rebecca Steketee; Marcel Koek; Henri Vrooman; M Arfan Ikram; Janne Papma; Aad van der Lugt; Marion Smits; Wiro J Niessen
Journal:  Neuroimage Clin       Date:  2018-08-09       Impact factor: 4.881

7.  Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG.

Authors:  Donatas Sederevičius; Didac Vidal-Piñeiro; Øystein Sørensen; Koen van Leemput; Juan Eugenio Iglesias; Adrian V Dalca; Douglas N Greve; Bruce Fischl; Atle Bjørnerud; Kristine B Walhovd; Anders M Fjell
Journal:  Neuroimage       Date:  2021-05-01       Impact factor: 7.400

8.  Robustness of radiomics to variations in segmentation methods in multimodal brain MRI.

Authors:  M G Poirot; M W A Caan; H G Ruhe; A Bjørnerud; I Groote; L Reneman; H A Marquering
Journal:  Sci Rep       Date:  2022-10-06       Impact factor: 4.996

  8 in total

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