Literature DB >> 24496464

Identification and quantification of polyfunctionalized hopanoids by high temperature gas chromatography-mass spectrometry.

Alex L Sessions1, Lichun Zhang1, Paula V Welander2, David Doughty3, Roger E Summons2, Dianne K Newman4.   

Abstract

Hopanoids are triterpenoids produced mainly by bacteria, are ubiquitous in the environment, and have many important applications as biological markers. A wide variety of related hopanoid structures exists, many of which are polyfunctionalized. These modifications render the hopanoids too involatile for conventional gas chromatography (GC) separation, so require either laborious oxidative cleavage of the functional groups or specialized high temperature (HT) columns. Here we describe the systematic evaluation and optimization of a HT-GC method for the analysis of polyfunctionalized hopanoids and their methylated homologs. Total lipid extracts are derivatized with acetic anhydride and no further treatment or workup is required. We show that acid or base hydrolysis to remove di- and triacylglycerides leads to degradation of several BHP structures. DB-XLB type columns can elute hopanoids up to bacteriohopane-tetrol at 350 °C, with baseline separation of all 2-methyl/desmethyl homologs. DB-5HT type columns can additionally elute bacteriohopaneaminotriol and bacteriohopaneaminotetrol, but do not fully separate 2-methyl/desmethyl homologs. The method gave 2- to 7-fold higher recovery of hopanoids than oxidative cleavage and can provide accurate quantification of all analytes including 2-methyl hopanoids. By comparing data from mass spectra with those from a flame ionization detector, we show that the mass spectromet (MS) response factors for different hopanoids using either total ion counts or m/z 191 vary substantially. Similarly, 2-methyl ratios estimated from selected-ion data are lower than those from FID by 10-30% for most hopanoids, but higher by ca. 10% for bacteriohopanetetrol. Mass spectra for a broad suite of hopanoids, including 2-methyl homologs, from Rhodopseudomonas palustris are presented, together with the tentative assignment of several new hopanoid degradation products.

Entities:  

Year:  2013        PMID: 24496464      PMCID: PMC3780965          DOI: 10.1016/j.orggeochem.2012.12.009

Source DB:  PubMed          Journal:  Org Geochem        ISSN: 0146-6380            Impact factor:   3.607


  26 in total

1.  Atmospheric pressure chemical ionisation reversed-phase liquid chromatography/ion trap mass spectrometry of intact bacteriohopanepolyols.

Authors:  Helen M Talbot; Angela H Squier; Brendan J Keely; Paul Farrimond
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

2.  Cloning, expression, and sequencing of squalene-hopene cyclase, a key enzyme in triterpenoid metabolism.

Authors:  D Ochs; C Kaletta; K D Entian; A Beck-Sickinger; K Poralla
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

3.  The structure of the membrane protein squalene-hopene cyclase at 2.0 A resolution.

Authors:  K U Wendt; A Lenhart; G E Schulz
Journal:  J Mol Biol       Date:  1999-02-12       Impact factor: 5.469

4.  Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes.

Authors:  Paula V Welander; Maureen L Coleman; Alex L Sessions; Roger E Summons; Dianne K Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

5.  Carbon isotopic fractionation in lipids from methanotrophic bacteria: relevance for interpretation of the geochemical record of biomarkers.

Authors:  R E Summons; L L Jahnke; Z Roksandic
Journal:  Geochim Cosmochim Acta       Date:  1994       Impact factor: 5.010

6.  Morphological, small subunit rRNA, and physiological characterization of Trimyema minutum (Kahl, 1931), an anaerobic ciliate from submarine hydrothermal vents growing from 28 degrees C to 52 degrees C.

Authors:  Manuela Baumgartner; Karl O Stetter; Wilhelm Foissner
Journal:  J Eukaryot Microbiol       Date:  2002 May-Jun       Impact factor: 3.346

7.  Characteristic fragmentation of bacteriohopanepolyols during atmospheric pressure chemical ionisation liquid chromatography/ion trap mass spectrometry.

Authors:  Helen M Talbot; Roger Summons; Linda Jahnke; Paul Farrimond
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

8.  Prokaryotic hopanoids: the biosynthesis of the bacteriohopane skeleton. Formation of isoprenic units from two distinct acetate pools and a novel type of carbon/carbon linkage between a triterpene and D-ribose.

Authors:  G Flesch; M Rohmer
Journal:  Eur J Biochem       Date:  1988-08-01

9.  Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph.

Authors:  Sky E Rashby; Alex L Sessions; Roger E Summons; Dianne K Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-11       Impact factor: 11.205

10.  Identification and characterization of Rhodopseudomonas palustris TIE-1 hopanoid biosynthesis mutants.

Authors:  P V Welander; D M Doughty; C-H Wu; S Mehay; R E Summons; D K Newman
Journal:  Geobiology       Date:  2012-01-04       Impact factor: 4.407

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  9 in total

1.  A distinct pathway for tetrahymanol synthesis in bacteria.

Authors:  Amy B Banta; Jeremy H Wei; Paula V Welander
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

Review 2.  Hopanoid lipids: from membranes to plant-bacteria interactions.

Authors:  Brittany J Belin; Nicolas Busset; Eric Giraud; Antonio Molinaro; Alba Silipo; Dianne K Newman
Journal:  Nat Rev Microbiol       Date:  2018-02-19       Impact factor: 60.633

3.  Variation of salinity and nitrogen concentration affects the pentacyclic triterpenoid inventory of the haloalkaliphilic aerobic methanotrophic bacterium Methylotuvimicrobium alcaliphilum.

Authors:  Alexmar Cordova-Gonzalez; Daniel Birgel; Andreas Kappler; Jörn Peckmann
Journal:  Extremophiles       Date:  2021-04-18       Impact factor: 2.395

4.  Quantitative hopanoid analysis enables robust pattern detection and comparison between laboratories.

Authors:  C-H Wu; L Kong; M Bialecka-Fornal; S Park; A L Thompson; G Kulkarni; S J Conway; D K Newman
Journal:  Geobiology       Date:  2015-04-11       Impact factor: 4.407

5.  Specific hopanoid classes differentially affect free-living and symbiotic states of Bradyrhizobium diazoefficiens.

Authors:  Gargi Kulkarni; Nicolas Busset; Antonio Molinaro; Daniel Gargani; Clemence Chaintreuil; Alba Silipo; Eric Giraud; Dianne K Newman
Journal:  mBio       Date:  2015-10-20       Impact factor: 7.867

6.  Diverse capacity for 2-methylhopanoid production correlates with a specific ecological niche.

Authors:  Jessica N Ricci; Maureen L Coleman; Paula V Welander; Alex L Sessions; Roger E Summons; John R Spear; Dianne K Newman
Journal:  ISME J       Date:  2013-10-24       Impact factor: 10.302

7.  Sterol Synthesis in Diverse Bacteria.

Authors:  Jeremy H Wei; Xinchi Yin; Paula V Welander
Journal:  Front Microbiol       Date:  2016-06-24       Impact factor: 5.640

8.  Anaerobic 3-methylhopanoid production by an acidophilic photosynthetic purple bacterium.

Authors:  Marisa H Mayer; Mary N Parenteau; Megan L Kempher; Michael T Madigan; Linda L Jahnke; Paula V Welander
Journal:  Arch Microbiol       Date:  2021-09-16       Impact factor: 2.552

9.  A squalene-hopene cyclase in Schizosaccharomyces japonicus represents a eukaryotic adaptation to sterol-limited anaerobic environments.

Authors:  Jonna Bouwknegt; Sanne J Wiersma; Raúl A Ortiz-Merino; Eline S R Doornenbal; Petrik Buitenhuis; Martin Giera; Christoph Müller; Jack T Pronk
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-10       Impact factor: 11.205

  9 in total

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