| Literature DB >> 24489705 |
Ying Zhao1, Yanbo Yu2, Xiaoli Tian3, Xi Yang3, Xueqi Li4, Feng Jiang4, Yundai Chen5, Maowei Shi1.
Abstract
BACKGROUND: Coronary heart disease (CHD) is one of the leading causes of mortality and morbidity in China. Genetic factors that predispose individuals to CHD are unclear. In the present study, we aimed to determine whether the variation of FoxOs, a novel genetic factor associated with longevity, was associated with CHD in Han Chinese populations.Entities:
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Year: 2014 PMID: 24489705 PMCID: PMC3904908 DOI: 10.1371/journal.pone.0086252
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
The pairs of PCR primers for amplifications of SNPs for FoxO1 and FoxO3.
| SNP | Gene | Position | primer |
| rs2755209 | FoxO1 | intron | forward: |
| reverse: | |||
| rs2721072 | FoxO1 | intron | forward: |
| reverse: | |||
| rs4325427 | FoxO1 | intron | forward: |
| reverse: | |||
| rs17592371 | FoxO1 | 3′UTR | forward: |
| reverse: | |||
| rs768023 | FoxO3 | promoter | forward: |
| reverse: | |||
| rs1268165 | FoxO3 | downstream | forward: |
| reverse: |
Characteristics of populations.
| Population 1 | Population 2 | |||||
| case (n = 808) | control (n = 829) | P value | case (n = 463) | control (n = 458) | P value | |
| age (year) | 60.36±10.22 | 61.12±12.01 | 0.166 | 54.06±8.76 | 53.27±9.06 | 0.175 |
| male | 634 (78.5%) | 647 (78.0%) | 0.837 | 335 (72.4%) | 332 (72.5%) | 0.963 |
| BMI (kg/m2) | 25.70±3.28 | 24.97±3.08 | <0.001 | 25.56±3.26 | 24.20±2.89 | <0.001 |
| smoking | 367 (45.4%) | 111 (13.4%) | <0.001 | 269 (58.1%) | 232 (50.7%) | <0.001 |
| Hypertension | 528 (65.3%) | 311 (37.5%) | <0.001 | 294 (63.5%) | 118 (25.8%) | <0.001 |
| diabetes mellitus | 225 (27.8%) | 104 (12.5%) | <0.001 | 125 (27.0%) | 30 (6.6%) | <0.001 |
| hyperlipidemia | 439 (54.3%) | 521 (62.8%) | <0.001 | 314 (67.8%) | 181 (39.5%) | <0.001 |
| Metabolic syndrome | 272 (33.7%) | 163 (19.7%) | <0.001 | 142 (30.7%) | 50 (10.9%) | <0.001 |
The data were presented as mean±SEM (standard error of the mean) for age and BMI as well as No.(percentage) for other factors. P values for age and BMI were calculated from t-test comparing case and control groups within population. P values for gender, smoking, hypertension, diabetes mellitus, hyperlipidemia, metabolic syndrome were calculated from Chi-square test within population. BMI: body mass index.
Frequency of FoxO1 and FoxO3 polymorphism in CHD from two different populations.
| Subjects from Population 1 | Subjects from Population 2 | Combined subjects | ||||||||
| SNP | genotype | CHD | Non-CHD | P | CHD | Non-CHD | P | CHD | Non-CHD | P |
| rs2755209 | CC | 403 | 423 | 0.269 | 221 | 223 | 0.836 | 624 | 646 | 0.234 |
| CA | 319 | 301 | 209 | 199 | 528 | 500 | ||||
| AA | 86 | 105 | 33 | 36 | 119 | 141 | ||||
| Allelic A frequency | 0.304 | 0.308 | 0.297 | 0.296 | 0.301 | 0.303 | ||||
| rs2721072 | AA | 360 | 399 | 0.285 | 219 | 207 | 0.245 | 579 | 606 | 0.263 |
| AG | 342 | 336 | 179 | 199 | 521 | 535 | ||||
| GG | 106 | 94 | 65 | 52 | 171 | 146 | ||||
| Allelic G frequency | 0.343 | 0.316 | 0.334 | 0.331 | 0.339 | 0.321 | ||||
| rs4325427 | TT | 378 | 392 | 0.393 | 226 | 220 | 0.759 | 604 | 612 | 0.322 |
| TC | 326 | 348 | 185 | 192 | 511 | 540 | ||||
| CC | 104 | 89 | 52 | 46 | 156 | 135 | ||||
| Allelic C frequency | 0.330 | 0.317 | 0.312 | 0.310 | 0.324 | 0.325 | ||||
| rs17592371 | CC | 380 | 387 | 0.986 | 218 | 202 | 0.651 | 598 | 589 | 0.794 |
| CT | 297 | 308 | 181 | 191 | 478 | 499 | ||||
| TT | 131 | 134 | 64 | 65 | 195 | 199 | ||||
| Allelic T frequency | 0.346 | 0.347 | 0.334 | 0.350 | 0.341 | 0.348 | ||||
| rs768023 | AA | 579 | 565 | 0.087 | 307 | 301 | 0.937 | 886 | 866 | 0.243 |
| AG | 176 | 218 | 136 | 135 | 312 | 353 | ||||
| GG | 53 | 46 | 20 | 22 | 73 | 68 | ||||
| Allelic G frequency | 0.175 | 0.187 | 0.190 | 0.195 | 0.180 | 0.189 | ||||
| rs1268165 | TT | 484 | 515 | 0.424 | 301 | 302 | 0.526 | 785 | 817 | 0.247 |
| TC | 296 | 280 | 142 | 130 | 438 | 410 | ||||
| CC | 28 | 34 | 20 | 26 | 48 | 60 | ||||
| Allelic C frequency | 0.218 | 0.210 | 0.197 | 0.199 | 0.210 | 0.206 | ||||
Calculations are performed with comparison of three different genotypes. Values are the number of subjects. No significant difference (chi-square test) was found in the frequency of either polymorphism between CHD cases and non-CHD controls.