Literature DB >> 24485787

DNA cleavage enzymes for treatment of persistent viral infections: recent advances and the pathway forward.

Nicholas D Weber1, Martine Aubert2, Chung H Dang3, Daniel Stone4, Keith R Jerome5.   

Abstract

Treatment for most persistent viral infections consists of palliative drug options rather than curative approaches. This is often because long-lasting viral DNA in infected cells is not affected by current antivirals, providing a source for viral persistence and reactivation. Targeting latent viral DNA itself could therefore provide a basis for novel curative strategies. DNA cleavage enzymes can be used to induce targeted mutagenesis of specific genes, including those of exogenous viruses. Although initial in vitro and even in vivo studies have been carried out using DNA cleavage enzymes targeting various viruses, many questions still remain concerning the feasibility of these strategies as they transition into preclinical research. Here, we review the most recent findings on DNA cleavage enzymes for human viral infections, consider the most relevant animal models for several human viral infections, and address issues regarding safety and enzyme delivery. Results from well-designed in vivo studies will ideally provide answers to the most urgent remaining questions, and allow continued progress toward clinical application.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Animal models; DNA cleavage enzymes; Endonuclease; Gene therapy; Gene therapy delivery; Persistent viruses; Targeted mutagenesis

Mesh:

Substances:

Year:  2014        PMID: 24485787      PMCID: PMC3988252          DOI: 10.1016/j.virol.2013.12.037

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  109 in total

1.  Long-term follow-up studies confirm the stability of the latent reservoir for HIV-1 in resting CD4+ T cells.

Authors:  Janet D Siliciano; Joleen Kajdas; Diana Finzi; Thomas C Quinn; Karen Chadwick; Joseph B Margolick; Colin Kovacs; Stephen J Gange; Robert F Siliciano
Journal:  Nat Med       Date:  2003-05-18       Impact factor: 53.440

2.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

3.  Latent herpes simplex virus. Isolation from rabbit trigeminal ganglia between episodes of recurrent ocular infection.

Authors:  A B Nesburn; M L Cook; J G Stevens
Journal:  Arch Ophthalmol       Date:  1972-10

4.  Rationally designed capsid and transgene cassette of AAV6 vectors for dendritic cell-based cancer immunotherapy.

Authors:  Jheel Pandya; Luis Ortiz; Chen Ling; Angela E Rivers; George Aslanidi
Journal:  Immunol Cell Biol       Date:  2013-11-12       Impact factor: 5.126

5.  HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation.

Authors:  Nicolas Chomont; Mohamed El-Far; Petronela Ancuta; Lydie Trautmann; Francesco A Procopio; Bader Yassine-Diab; Geneviève Boucher; Mohamed-Rachid Boulassel; Georges Ghattas; Jason M Brenchley; Timothy W Schacker; Brenna J Hill; Daniel C Douek; Jean-Pierre Routy; Elias K Haddad; Rafick-Pierre Sékaly
Journal:  Nat Med       Date:  2009-06-21       Impact factor: 53.440

6.  Molecular diagnosis of a laboratory mouse papillomavirus (MusPV).

Authors:  Joongho Joh; A Bennett Jenson; Mary Proctor; Arvind Ingle; Kathleen A Silva; Christopher S Potter; John P Sundberg; Shin-je Ghim
Journal:  Exp Mol Pathol       Date:  2012-07-11       Impact factor: 3.362

7.  Generation of HIV latency in humanized BLT mice.

Authors:  Paul W Denton; Rikke Olesen; Shailesh K Choudhary; Nancy M Archin; Angela Wahl; Michael D Swanson; Morgan Chateau; Tomonori Nochi; John F Krisko; Rae Ann Spagnuolo; David M Margolis; J Victor Garcia
Journal:  J Virol       Date:  2011-10-19       Impact factor: 5.103

8.  Autonomous zinc-finger nuclease pairs for targeted chromosomal deletion.

Authors:  Cem Söllü; Kaweh Pars; Tatjana I Cornu; Stacey Thibodeau-Beganny; Morgan L Maeder; J Keith Joung; Regine Heilbronn; Toni Cathomen
Journal:  Nucleic Acids Res       Date:  2010-08-16       Impact factor: 16.971

9.  Excision of HIV-1 proviral DNA by recombinant cell permeable tre-recombinase.

Authors:  Lakshmikanth Mariyanna; Poornima Priyadarshini; Helga Hofmann-Sieber; Marcel Krepstakies; Nicole Walz; Adam Grundhoff; Frank Buchholz; Eberhard Hildt; Joachim Hauber
Journal:  PLoS One       Date:  2012-02-13       Impact factor: 3.240

10.  megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering.

Authors:  Sandrine Boissel; Jordan Jarjour; Alexander Astrakhan; Andrew Adey; Agnès Gouble; Philippe Duchateau; Jay Shendure; Barry L Stoddard; Michael T Certo; David Baker; Andrew M Scharenberg
Journal:  Nucleic Acids Res       Date:  2013-11-26       Impact factor: 16.971

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  14 in total

Review 1.  Genome editing and the next generation of antiviral therapy.

Authors:  Daniel Stone; Nixon Niyonzima; Keith R Jerome
Journal:  Hum Genet       Date:  2016-06-08       Impact factor: 4.132

2.  Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy.

Authors:  Harshana S De Silva Feelixge; Daniel Stone; Harlan L Pietz; Pavitra Roychoudhury; Alex L Greninger; Joshua T Schiffer; Martine Aubert; Keith R Jerome
Journal:  Antiviral Res       Date:  2015-12-22       Impact factor: 5.970

3.  In vivo disruption of latent HSV by designer endonuclease therapy.

Authors:  Martine Aubert; Emily A Madden; Michelle Loprieno; Harshana S DeSilva Feelixge; Laurence Stensland; Meei-Li Huang; Alexander L Greninger; Pavitra Roychoudhury; Nixon Niyonzima; Thuy Nguyen; Amalia Magaret; Roman Galleto; Daniel Stone; Keith R Jerome
Journal:  JCI Insight       Date:  2016-09-08

4.  Pharmacodynamics of anti-HIV gene therapy using viral vectors and targeted endonucleases.

Authors:  Pavitra Roychoudhury; Harshana S De Silva Feelixge; Harlan L Pietz; Daniel Stone; Keith R Jerome; Joshua T Schiffer
Journal:  J Antimicrob Chemother       Date:  2016-04-18       Impact factor: 5.790

Review 5.  Chromatin-mediated epigenetic regulation of HSV-1 transcription as a potential target in antiviral therapy.

Authors:  Luis M Schang; MiYao Hu; Esteban Flores Cortes; Kairui Sun
Journal:  Antiviral Res       Date:  2021-06-01       Impact factor: 5.970

6.  mRNA transfection of a novel TAL effector nuclease (TALEN) facilitates efficient knockout of HIV co-receptor CCR5.

Authors:  Ulrike Mock; Rafał Machowicz; Ilona Hauber; Stefan Horn; Pierre Abramowski; Belinda Berdien; Joachim Hauber; Boris Fehse
Journal:  Nucleic Acids Res       Date:  2015-05-11       Impact factor: 16.971

7.  In vivo dynamics of AAV-mediated gene delivery to sensory neurons of the trigeminal ganglia.

Authors:  Chung H Dang; Martine Aubert; Harshana S De Silva Feelixge; Kurt Diem; Michelle A Loprieno; Pavitra Roychoudhury; Daniel Stone; Keith R Jerome
Journal:  Sci Rep       Date:  2017-04-19       Impact factor: 4.379

8.  CRISPR/Cas9 nickase-mediated disruption of hepatitis B virus open reading frame S and X.

Authors:  Madina Karimova; Niklas Beschorner; Werner Dammermann; Jan Chemnitz; Daniela Indenbirken; Jan-Hendrik Bockmann; Adam Grundhoff; Stefan Lüth; Frank Buchholz; Julian Schulze zur Wiesch; Joachim Hauber
Journal:  Sci Rep       Date:  2015-09-03       Impact factor: 4.379

9.  AAV-mediated delivery of zinc finger nucleases targeting hepatitis B virus inhibits active replication.

Authors:  Nicholas D Weber; Daniel Stone; Ruth Hall Sedlak; Harshana S De Silva Feelixge; Pavitra Roychoudhury; Joshua T Schiffer; Martine Aubert; Keith R Jerome
Journal:  PLoS One       Date:  2014-05-14       Impact factor: 3.240

10.  Elimination of HIV-1 Genomes from Human T-lymphoid Cells by CRISPR/Cas9 Gene Editing.

Authors:  Rafal Kaminski; Yilan Chen; Tracy Fischer; Ellen Tedaldi; Alessandro Napoli; Yonggang Zhang; Jonathan Karn; Wenhui Hu; Kamel Khalili
Journal:  Sci Rep       Date:  2016-03-04       Impact factor: 4.379

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