Literature DB >> 24484889

Advances in high-throughput single-cell microtechnologies.

Westbrook M Weaver1, Peter Tseng1, Anja Kunze1, Mahdokht Masaeli1, Aram J Chung1, Jaideep S Dudani1, Harsha Kittur1, Rajan P Kulkarni2, Dino Di Carlo3.   

Abstract

Micro-scale biological tools that have allowed probing of individual cells--from the genetic, to proteomic, to phenotypic level--have revealed important contributions of single cells to direct normal and diseased body processes. In analyzing single cells, sample heterogeneity between and within specific cell types drives the need for high-throughput and quantitative measurement of cellular parameters. In recent years, high-throughput single-cell analysis platforms have revealed rare genetic subpopulations in growing tumors, begun to uncover the mechanisms of antibiotic resistance in bacteria, and described the cell-to-cell variations in stem cell differentiation and immune cell response to activation by pathogens. This review surveys these recent technologies, presenting their strengths and contributions to the field, and identifies needs still unmet toward the development of high-throughput single-cell analysis tools to benefit life science research and clinical diagnostics.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24484889      PMCID: PMC3912466          DOI: 10.1016/j.copbio.2013.09.005

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  89 in total

1.  Topographic cues of nano-scale height direct neuronal growth pattern.

Authors:  Koby Baranes; Nathan Chejanovsky; Noa Alon; Amos Sharoni; Orit Shefi
Journal:  Biotechnol Bioeng       Date:  2012-01-24       Impact factor: 4.530

2.  Formation of one-way-structured cultured neuronal networks in microfluidic devices combining with micropatterning techniques.

Authors:  Yuzo Takayama; Naoki Kotake; Tatsuya Haga; Takafumi Suzuki; Kunihiko Mabuchi
Journal:  J Biosci Bioeng       Date:  2012-04-24       Impact factor: 2.894

3.  Hydrodynamic stretching of single cells for large population mechanical phenotyping.

Authors:  Daniel R Gossett; Henry T K Tse; Serena A Lee; Yong Ying; Anne G Lindgren; Otto O Yang; Jianyu Rao; Amander T Clark; Dino Di Carlo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-30       Impact factor: 11.205

4.  Automated analysis of single stem cells in microfluidic traps.

Authors:  Stefan A Kobel; Olivier Burri; Alexandra Griffa; Mukul Girotra; Arne Seitz; Matthias P Lutolf
Journal:  Lab Chip       Date:  2012-05-31       Impact factor: 6.799

5.  High-throughput single-microparticle imaging flow analyzer.

Authors:  Keisuke Goda; Ali Ayazi; Daniel R Gossett; Jagannath Sadasivam; Cejo K Lonappan; Elodie Sollier; Ali M Fard; Soojung Claire Hur; Jost Adam; Coleman Murray; Chao Wang; Nora Brackbill; Dino Di Carlo; Bahram Jalali
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

6.  Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm.

Authors:  Jianbin Wang; H Christina Fan; Barry Behr; Stephen R Quake
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

7.  Quantitative analysis of axonal transport by using compartmentalized and surface micropatterned culture of neurons.

Authors:  Hyung Joon Kim; Jeong Won Park; Jae Hwan Byun; Wayne W Poon; Carl W Cotman; Charless C Fowlkes; Noo Li Jeon
Journal:  ACS Chem Neurosci       Date:  2012-06-20       Impact factor: 4.418

8.  RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis.

Authors:  Min Yu; David T Ting; Shannon L Stott; Ben S Wittner; Fatih Ozsolak; Suchismita Paul; Jordan C Ciciliano; Malgorzata E Smas; Daniel Winokur; Anna J Gilman; Matthew J Ulman; Kristina Xega; Gianmarco Contino; Brinda Alagesan; Brian W Brannigan; Patrice M Milos; David P Ryan; Lecia V Sequist; Nabeel Bardeesy; Sridhar Ramaswamy; Mehmet Toner; Shyamala Maheswaran; Daniel A Haber
Journal:  Nature       Date:  2012-07-26       Impact factor: 49.962

9.  Increased asymmetric and multi-daughter cell division in mechanically confined microenvironments.

Authors:  Henry Tat Kwong Tse; Westbrook McConnell Weaver; Dino Di Carlo
Journal:  PLoS One       Date:  2012-06-25       Impact factor: 3.240

10.  Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).

Authors:  Sünje J Pamp; Eoghan D Harrington; Stephen R Quake; David A Relman; Paul C Blainey
Journal:  Genome Res       Date:  2012-03-20       Impact factor: 9.043

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  27 in total

1.  Characterizing Cellular Biophysical Responses to Stress by Relating Density, Deformability, and Size.

Authors:  Sangwon Byun; Vivian C Hecht; Scott R Manalis
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

2.  Cell membrane deformation and bioeffects produced by tandem bubble-induced jetting flow.

Authors:  Fang Yuan; Chen Yang; Pei Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-09       Impact factor: 11.205

Review 3.  Estimation methods for heterogeneous cell population models in systems biology.

Authors:  Steffen Waldherr
Journal:  J R Soc Interface       Date:  2018-10-31       Impact factor: 4.118

Review 4.  Advances in Micropipette Aspiration: Applications in Cell Biomechanics, Models, and Extended Studies.

Authors:  Blanca González-Bermúdez; Gustavo V Guinea; Gustavo R Plaza
Journal:  Biophys J       Date:  2019-01-07       Impact factor: 4.033

5.  Next-generation Sequencing (NGS) Analysis on Single Circulating Tumor Cells (CTCs) with No Need of Whole-genome Amplification (WGA).

Authors:  Raffaele Palmirotta; Domenica Lovero; Erica Silvestris; Claudia Felici; Davide Quaresmini; Paola Cafforio; Franco Silvestris
Journal:  Cancer Genomics Proteomics       Date:  2017 May-Jun       Impact factor: 4.069

Review 6.  Recent advances in the use of microfluidic technologies for single cell analysis.

Authors:  Travis W Murphy; Qiang Zhang; Lynette B Naler; Sai Ma; Chang Lu
Journal:  Analyst       Date:  2017-12-18       Impact factor: 4.616

7.  Highly efficient and gentle trapping of single cells in large microfluidic arrays for time-lapse experiments.

Authors:  F Yesilkoy; R Ueno; B X E Desbiolles; M Grisi; Y Sakai; B J Kim; J Brugger
Journal:  Biomicrofluidics       Date:  2016-02-19       Impact factor: 2.800

Review 8.  Functional and Biomimetic Materials for Engineering of the Three-Dimensional Cell Microenvironment.

Authors:  Guoyou Huang; Fei Li; Xin Zhao; Yufei Ma; Yuhui Li; Min Lin; Guorui Jin; Tian Jian Lu; Guy M Genin; Feng Xu
Journal:  Chem Rev       Date:  2017-10-09       Impact factor: 60.622

Review 9.  Recent Advances in the Analysis of Single Cells.

Authors:  Lucas Armbrecht; Petra S Dittrich
Journal:  Anal Chem       Date:  2016-12-07       Impact factor: 6.986

10.  'Cytology-on-a-chip' based sensors for monitoring of potentially malignant oral lesions.

Authors:  Timothy J Abram; Pierre N Floriano; Nicolaos Christodoulides; Robert James; A Ross Kerr; Martin H Thornhill; Spencer W Redding; Nadarajah Vigneswaran; Paul M Speight; Julie Vick; Craig Murdoch; Christine Freeman; Anne M Hegarty; Katy D'Apice; Joan A Phelan; Patricia M Corby; Ismael Khouly; Jerry Bouquot; Nagi M Demian; Y Etan Weinstock; Stephanie Rowan; Chih-Ko Yeh; H Stan McGuff; Frank R Miller; Surabhi Gaur; Kailash Karthikeyan; Leander Taylor; Cathy Le; Michael Nguyen; Humberto Talavera; Rameez Raja; Jorge Wong; John T McDevitt
Journal:  Oral Oncol       Date:  2016-07-20       Impact factor: 5.337

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