Literature DB >> 24481600

Wavepacket splitting and two-pathway deactivation in the photoexcited visual pigment isorhodopsin.

Dario Polli1, Oliver Weingart, Daniele Brida, Emiliano Poli, Margherita Maiuri, Katelyn M Spillane, Andrea Bottoni, Philipp Kukura, Richard A Mathies, Giulio Cerullo, Marco Garavelli.   

Abstract

Isorhodopsin is the visual pigment analogue of rhodopsin. It shares the same opsin environment but it embeds 9-cis retinal instead of 11-cis. Its photoisomerization is three times slower and less effective. The mechanistic rationale behind this observation is revealed by combining high-level quantum-mechanical/molecular-mechanical simulations with ultrafast optical spectroscopy with sub-20 fs time resolution and spectral coverage extended to the near-infrared. Whereas in rhodopsin the photoexcited wavepacket has ballistic motion through a single conical intersection seam region between the ground and excited states, in isorhodopsin it branches into two competitive deactivation pathways involving distinct conical intersection funnels. One is rapidly accessed but unreactive. The other is slower, as it features extended steric interactions with the environment, but it is productive as it follows forward bicycle pedal motion.
Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  conical intersections; isomerization; isorhodopsin; photochemistry; time-resolved spectroscopy

Mesh:

Substances:

Year:  2014        PMID: 24481600     DOI: 10.1002/anie.201309867

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  2 in total

1.  COBRAMM 2.0 - A software interface for tailoring molecular electronic structure calculations and running nanoscale (QM/MM) simulations.

Authors:  Oliver Weingart; Artur Nenov; Piero Altoè; Ivan Rivalta; Javier Segarra-Martí; Irina Dokukina; Marco Garavelli
Journal:  J Mol Model       Date:  2018-09-03       Impact factor: 1.810

2.  Control of Protonated Schiff Base Excited State Decay within Visual Protein Mimics: A Unified Model for Retinal Chromophores.

Authors:  Baptiste Demoulin; Margherita Maiuri; Tetyana Berbasova; James H Geiger; Babak Borhan; Marco Garavelli; Giulio Cerullo; Ivan Rivalta
Journal:  Chemistry       Date:  2021-10-28       Impact factor: 5.236

  2 in total

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