Literature DB >> 24478488

Comparison of conventional PCR, multiplex PCR, and loop-mediated isothermal amplification assays for rapid detection of Arcobacter species.

Xiaoyu Wang1, Dong Joo Seo, Min Hwa Lee, Changsun Choi.   

Abstract

This study aimed to develop a loop-mediated isothermal amplification (LAMP) method for the rapid detection of Arcobacter species. Specific primers targeting the 23S ribosomal RNA gene were used to detect Arcobacter butzleri, Arcobacter cryaerophilus, and Arcobacter skirrowii. The specificity of the LAMP primer set was assessed using DNA samples from a panel of Arcobacter and Campylobacter species, and the sensitivity was determined using serial dilutions of Arcobacter species cultures. LAMP showed a 10- to 1,000-fold-higher sensitivity than multiplex PCR, with a detection limit of 2 to 20 CFU per reaction in vitro. Whereas multiplex PCR showed cross-reactivity with Campylobacter species, the LAMP method developed in this study was more sensitive and reliable than conventional PCR or multiplex PCR for the detection of Arcobacter species.

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Year:  2013        PMID: 24478488      PMCID: PMC3911361          DOI: 10.1128/JCM.02883-13

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  44 in total

1.  Arcobacter bivalviorum sp. nov. and Arcobacter venerupis sp. nov., new species isolated from shellfish.

Authors:  Arturo Levican; Luis Collado; Carmen Aguilar; Clara Yustes; Ana L Diéguez; Jesús L Romalde; Maria José Figueras
Journal:  Syst Appl Microbiol       Date:  2012-03-06       Impact factor: 4.022

2.  Bacteremia caused by Arcobacter cryaerophilus 1B.

Authors:  P R Hsueh; L J Teng; P C Yang; S K Wang; S C Chang; S W Ho; W C Hsieh; K T Luh
Journal:  J Clin Microbiol       Date:  1997-02       Impact factor: 5.948

3.  Emerging pathogen Arcobacter spp. in acute gastroenteritis: molecular identification, antibiotic susceptibilities and genotyping of the isolated arcobacters.

Authors:  Tuba Kayman; Seçil Abay; Harun Hizlisoy; H İbrahim Atabay; K Serdar Diker; Fuat Aydin
Journal:  J Med Microbiol       Date:  2012-06-14       Impact factor: 2.472

4.  Arcobacter defluvii sp. nov., isolated from sewage samples.

Authors:  Luis Collado; Arturo Levican; Jessica Perez; Maria José Figueras
Journal:  Int J Syst Evol Microbiol       Date:  2010-10-01       Impact factor: 2.747

5.  A selective medium for the isolation of Arcobacter from meats.

Authors:  E de Boer; J J Tilburg; D L Woodward; H Lior; W M Johnson
Journal:  Lett Appl Microbiol       Date:  1996-07       Impact factor: 2.858

6.  Development of a loop-mediated isothermal amplification procedure as a sensitive and rapid method for detection of 'candidatus Liberibacter solanacearum' in potatoes and Psyllids.

Authors:  Aravind Ravindran; Julien Levy; Elizabeth Pierson; Dennis C Gross
Journal:  Phytopathology       Date:  2012-09       Impact factor: 4.025

7.  Control of Campylobacter jejuni in chicken breast meat by irradiation combined with modified atmosphere packaging including carbon monoxide.

Authors:  Li L Kudra; Joseph G Sebranek; James S Dickson; Aubrey F Mendonca; Q Zhang; Armitra Jackson-Davis; Kenneth J Prusa
Journal:  J Food Prot       Date:  2012-10       Impact factor: 2.077

8.  Sensitive and rapid detection of Campylobacter jejuni and Campylobacter coli using loop-mediated isothermal amplification.

Authors:  Wataru Yamazaki
Journal:  Methods Mol Biol       Date:  2013

9.  ATP citrate lyase 1 (acl1) gene-based loop-mediated amplification assay for the detection of the Fusarium tricinctum species complex in pure cultures and in cereal samples.

Authors:  Ludwig Niessen; Tom Gräfenhan; Rudi F Vogel
Journal:  Int J Food Microbiol       Date:  2012-07-16       Impact factor: 5.277

10.  Rapid and sensitive detection of Plesiomonas shigelloides by loop-mediated isothermal amplification of the hugA gene.

Authors:  Shuang Meng; Jianguo Xu; Yanwen Xiong; Changyun Ye
Journal:  PLoS One       Date:  2012-10-15       Impact factor: 3.240

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  16 in total

1.  Isothermal Detection of Mycoplasma pneumoniae Directly from Respiratory Clinical Specimens.

Authors:  Brianna L Petrone; Bernard J Wolff; Alexandra A DeLaney; Maureen H Diaz; Jonas M Winchell
Journal:  J Clin Microbiol       Date:  2015-07-15       Impact factor: 5.948

2.  Species-specific loop-mediated isothermal amplification (LAMP) assay for identification of tissue of cattle origin by targeting mitochondrial gene sequences.

Authors:  Sarita Kumari; Rajiv Ranjan Kumar; Sanjod Kumar Mendiratta; Deepak Kumar; Preeti Rana; Dhananjay Kumar; Jyoti Jawla
Journal:  3 Biotech       Date:  2019-02-05       Impact factor: 2.406

3.  Arcobacter Identification and Species Determination Using Raman Spectroscopy Combined with Neural Networks.

Authors:  Kaidi Wang; Lei Chen; Xiangyun Ma; Lina Ma; Keng C Chou; Yankai Cao; Izhar U H Khan; Greta Gölz; Xiaonan Lu
Journal:  Appl Environ Microbiol       Date:  2020-10-01       Impact factor: 4.792

4.  Fingerpick Blood-Based Nucleic Acid Testing on A USB Interfaced Device towards HIV self-testing.

Authors:  Tianyi Liu; Gihoon Choi; Zifan Tang; Aneesh Kshirsagar; Anthony J Politza; Weihua Guan
Journal:  Biosens Bioelectron       Date:  2022-04-08       Impact factor: 12.545

5.  Molecular Detection of New Delhi Metallo-Beta-Lactamase-1 (NDM-1) Positive Bacteria from Environmental and Drinking Water Samples by Loop Mediated Isothermal Amplification of bla NDM-1.

Authors:  P Rathinasabapathi; Deepak S Hiremath; Rex Arunraj; M Parani
Journal:  Indian J Microbiol       Date:  2015-06-24       Impact factor: 2.461

6.  Serotyping dengue virus with isothermal amplification and a portable sequencer.

Authors:  Junya Yamagishi; Lucky R Runtuwene; Kyoko Hayashida; Arthur E Mongan; Lan Anh Nguyen Thi; Linh Nguyen Thuy; Cam Nguyen Nhat; Kriengsak Limkittikul; Chukiat Sirivichayakul; Nuankanya Sathirapongsasuti; Martin Frith; Wojciech Makalowski; Yuki Eshita; Sumio Sugano; Yutaka Suzuki
Journal:  Sci Rep       Date:  2017-06-14       Impact factor: 4.379

7.  Evaluation and improvement of isothermal amplification methods for point-of-need plant disease diagnostics.

Authors:  Yiping Zou; Michael Glenn Mason; Jose Ramon Botella
Journal:  PLoS One       Date:  2020-06-29       Impact factor: 3.240

8.  Loop-mediated isothermal amplification for detection of Legionella pneumophila in respiratory specimens of hospitalized patients in Ahvaz, southwest Iran.

Authors:  Mojtaba Moosavian; Sakineh Seyed-Mohammadi; Morteza Saki; Fatemeh Shahi; Mahtab Khoshkholgh Sima; Davoud Afshar; Sara Barati
Journal:  Infect Drug Resist       Date:  2019-03-01       Impact factor: 4.003

9.  The application of the loop-mediated isothermal amplification (LAMP) method for diagnosing Enterococcus hirae-associated endocarditis outbreaks in chickens.

Authors:  Beata Dolka; Agata Anna Cisek; Piotr Szeleszczuk
Journal:  BMC Microbiol       Date:  2019-02-21       Impact factor: 3.605

10.  2019 Novel Coronavirus Disease (COVID-19): Paving the Road for Rapid Detection and Point-of-Care Diagnostics.

Authors:  Trieu Nguyen; Dang Duong Bang; Anders Wolff
Journal:  Micromachines (Basel)       Date:  2020-03-14       Impact factor: 2.891

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