Literature DB >> 24477197

Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean.

Julie C Robidart1, Matthew J Church2, John P Ryan3, François Ascani2, Samuel T Wilson2, Deniz Bombar4, Roman Marin3, Kelvin J Richards2, David M Karl2, Christopher A Scholin5, Jonathan P Zehr4.   

Abstract

Nitrogen-fixing microorganisms (diazotrophs) are keystone species that reduce atmospheric dinitrogen (N2) gas to fixed nitrogen (N), thereby accounting for much of N-based new production annually in the oligotrophic North Pacific. However, current approaches to study N2 fixation provide relatively limited spatiotemporal sampling resolution; hence, little is known about the ecological controls on these microorganisms or the scales over which they change. In the present study, we used a drifting robotic gene sensor to obtain high-resolution data on the distributions and abundances of N2-fixing populations over small spatiotemporal scales. The resulting measurements demonstrate that concentrations of N2 fixers can be highly variable, changing in abundance by nearly three orders of magnitude in less than 2 days and 30 km. Concurrent shipboard measurements and long-term time-series sampling uncovered a striking and previously unrecognized correlation between phosphate, which is undergoing long-term change in the region, and N2-fixing cyanobacterial abundances. These results underscore the value of high-resolution sampling and its applications for modeling the effects of global change.

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Year:  2014        PMID: 24477197      PMCID: PMC4030237          DOI: 10.1038/ismej.2013.244

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  18 in total

Review 1.  Historical overfishing and the recent collapse of coastal ecosystems.

Authors:  J B Jackson; M X Kirby; W H Berger; K A Bjorndal; L W Botsford; B J Bourque; R H Bradbury; R Cooke; J Erlandson; J A Estes; T P Hughes; S Kidwell; C B Lange; H S Lenihan; J M Pandolfi; C H Peterson; R S Steneck; M J Tegner; R R Warner
Journal:  Science       Date:  2001-07-27       Impact factor: 47.728

2.  Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixation.

Authors:  David M Karl; Matthew J Church; John E Dore; Ricardo M Letelier; Claire Mahaffey
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

Review 3.  Seasonality in ocean microbial communities.

Authors:  Stephen J Giovannoni; Kevin L Vergin
Journal:  Science       Date:  2012-02-10       Impact factor: 47.728

4.  Temporal patterns of nitrogenase gene (nifH) expression in the oligotrophic North Pacific Ocean.

Authors:  Matthew J Church; Cindy M Short; Bethany D Jenkins; David M Karl; Jonathan P Zehr
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

5.  Transatlantic abundance of the N2-fixing colonial cyanobacterium Trichodesmium.

Authors:  Cabell S Davis; Dennis J McGillicuddy
Journal:  Science       Date:  2006-06-09       Impact factor: 47.728

Review 6.  Emerging patterns of marine nitrogen fixation.

Authors:  Jill A Sohm; Eric A Webb; Douglas G Capone
Journal:  Nat Rev Microbiol       Date:  2011-06-16       Impact factor: 60.633

7.  Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain.

Authors:  Pia H Moisander; Roxanne A Beinart; Ian Hewson; Angelicque E White; Kenneth S Johnson; Craig A Carlson; Joseph P Montoya; Jonathan P Zehr
Journal:  Science       Date:  2010-02-25       Impact factor: 47.728

8.  Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga.

Authors:  Anne W Thompson; Rachel A Foster; Andreas Krupke; Brandon J Carter; Niculina Musat; Daniel Vaulot; Marcel M M Kuypers; Jonathan P Zehr
Journal:  Science       Date:  2012-09-21       Impact factor: 47.728

9.  Nitrogen fixation in an anticyclonic eddy in the oligotrophic North Pacific Ocean.

Authors:  Allison A Fong; David M Karl; Roger Lukas; Ricardo M Letelier; Jonathan P Zehr; Matthew J Church
Journal:  ISME J       Date:  2008-02-28       Impact factor: 10.302

10.  Underwater application of quantitative PCR on an ocean mooring.

Authors:  Christina M Preston; Adeline Harris; John P Ryan; Brent Roman; Roman Marin; Scott Jensen; Cheri Everlove; James Birch; John M Dzenitis; Douglas Pargett; Masao Adachi; Kendra Turk; Jonathon P Zehr; Christopher A Scholin
Journal:  PLoS One       Date:  2011-08-01       Impact factor: 3.240

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  14 in total

1.  Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

Authors:  Samuel T Wilson; Frank O Aylward; Francois Ribalet; Benedetto Barone; John R Casey; Paige E Connell; John M Eppley; Sara Ferrón; Jessica N Fitzsimmons; Christopher T Hayes; Anna E Romano; Kendra A Turk-Kubo; Alice Vislova; E Virginia Armbrust; David A Caron; Matthew J Church; Jonathan P Zehr; David M Karl; Edward F DeLong
Journal:  Nat Microbiol       Date:  2017-07-31       Impact factor: 17.745

2.  Effects of nutrient enrichment on surface microbial community gene expression in the oligotrophic North Pacific Subtropical Gyre.

Authors:  J C Robidart; J D Magasin; I N Shilova; K A Turk-Kubo; S T Wilson; D M Karl; C A Scholin; J P Zehr
Journal:  ISME J       Date:  2018-09-25       Impact factor: 10.302

Review 3.  The marine nitrogen cycle: new developments and global change.

Authors:  David A Hutchins; Douglas G Capone
Journal:  Nat Rev Microbiol       Date:  2022-02-07       Impact factor: 78.297

4.  High levels of heterogeneity in diazotroph diversity and activity within a putative hotspot for marine nitrogen fixation.

Authors:  Lauren F Messer; Claire Mahaffey; Charlotte M Robinson; Thomas C Jeffries; Kirralee G Baker; Jaime Bibiloni Isaksson; Martin Ostrowski; Martina A Doblin; Mark V Brown; Justin R Seymour
Journal:  ISME J       Date:  2015-11-27       Impact factor: 10.302

5.  Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis.

Authors:  Ana M Cabello; Francisco M Cornejo-Castillo; Nicolas Raho; Dolors Blasco; Montserrat Vidal; Stéphane Audic; Colomban de Vargas; Mikel Latasa; Silvia G Acinas; Ramon Massana
Journal:  ISME J       Date:  2015-09-25       Impact factor: 10.302

Review 6.  Global solutions to regional problems: Collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study.

Authors:  George S Bullerjahn; Robert M McKay; Timothy W Davis; David B Baker; Gregory L Boyer; Lesley V D'Anglada; Gregory J Doucette; Jeff C Ho; Elena G Irwin; Catherine L Kling; Raphael M Kudela; Rainer Kurmayer; Anna M Michalak; Joseph D Ortiz; Timothy G Otten; Hans W Paerl; Boqiang Qin; Brent L Sohngen; Richard P Stumpf; Petra M Visser; Steven W Wilhelm
Journal:  Harmful Algae       Date:  2016-04       Impact factor: 4.273

7.  New insights into the distributions of nitrogen fixation and diazotrophs revealed by high-resolution sensing and sampling methods.

Authors:  Weiyi Tang; Elena Cerdán-García; Hugo Berthelot; Despo Polyviou; Seaver Wang; Alison Baylay; Hannah Whitby; Hélène Planquette; Matthew Mowlem; Julie Robidart; Nicolas Cassar
Journal:  ISME J       Date:  2020-06-24       Impact factor: 10.302

8.  Genetic Diversity Affects the Daily Transcriptional Oscillations of Marine Microbial Populations.

Authors:  Irina N Shilova; Julie C Robidart; Edward F DeLong; Jonathan P Zehr
Journal:  PLoS One       Date:  2016-01-11       Impact factor: 3.240

9.  Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre.

Authors:  Jessica A Bryant; Frank O Aylward; John M Eppley; David M Karl; Matthew J Church; Edward F DeLong
Journal:  ISME J       Date:  2015-12-08       Impact factor: 10.302

10.  Highly heterogeneous diazotroph communities in the Kuroshio Current and the Tokara Strait, Japan.

Authors:  Shunyan Cheung; Koji Suzuki; Hiroaki Saito; Yu Umezawa; Xiaomin Xia; Hongbin Liu
Journal:  PLoS One       Date:  2017-10-23       Impact factor: 3.240

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