Literature DB >> 24469252

A simple Markov model of sodium channels with a dynamic threshold.

A V Chizhov1, E Yu Smirnova, K Kh Kim, A V Zaitsev.   

Abstract

Characteristics of action potential generation are important to understanding brain functioning and, thus, must be understood and modeled. It is still an open question what model can describe concurrently the phenomena of sharp spike shape, the spike threshold variability, and the divisive effect of shunting on the gain of frequency-current dependence. We reproduced these three effects experimentally by patch-clamp recordings in cortical slices, but we failed to simulate them by any of 11 known neuron models, including one- and multi-compartment, with Hodgkin-Huxley and Markov equation-based sodium channel approximations, and those taking into account sodium channel subtype heterogeneity. Basing on our voltage-clamp data characterizing the dependence of sodium channel activation threshold on history of depolarization, we propose a 3-state Markov model with a closed-to-open state transition threshold dependent on slow inactivation. This model reproduces the all three phenomena. As a reduction of this model, a leaky integrate-and-fire model with a dynamic threshold also shows the effect of gain reduction by shunt. These results argue for the mechanism of gain reduction through threshold dynamics determined by the slow inactivation of sodium channels.

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Year:  2014        PMID: 24469252     DOI: 10.1007/s10827-014-0496-6

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  29 in total

1.  Cellular mechanisms contributing to response variability of cortical neurons in vivo.

Authors:  R Azouz; C M Gray
Journal:  J Neurosci       Date:  1999-03-15       Impact factor: 6.167

2.  Action potential threshold of hippocampal pyramidal cells in vivo is increased by recent spiking activity.

Authors:  D A Henze; G Buzsáki
Journal:  Neuroscience       Date:  2001       Impact factor: 3.590

3.  Spike-frequency adaptation of a generalized leaky integrate-and-fire model neuron.

Authors:  Y H Liu; X J Wang
Journal:  J Comput Neurosci       Date:  2001 Jan-Feb       Impact factor: 1.621

4.  Interspike interval correlations, memory, adaptation, and refractoriness in a leaky integrate-and-fire model with threshold fatigue.

Authors:  Maurice J Chacron; Khashayar Pakdaman; André Longtin
Journal:  Neural Comput       Date:  2003-02       Impact factor: 2.026

5.  Population model of hippocampal pyramidal neurons, linking a refractory density approach to conductance-based neurons.

Authors:  Anton V Chizhov; Lyle J Graham
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-01-26

6.  Efficient evaluation of neuron populations receiving colored-noise current based on a refractory density method.

Authors:  Anton V Chizhov; Lyle J Graham
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-01-17

7.  Kinetic properties and functional dynamics of sodium channels during repetitive spiking in a slow pacemaker neuron.

Authors:  Lorin S Milescu; Tadashi Yamanishi; Krzysztof Ptak; Jeffrey C Smith
Journal:  J Neurosci       Date:  2010-09-08       Impact factor: 6.167

8.  Reduction of spike afterdepolarization by increased leak conductance alters interspike interval variability.

Authors:  Fernando R Fernandez; John A White
Journal:  J Neurosci       Date:  2009-01-28       Impact factor: 6.167

9.  Cortical action potential backpropagation explains spike threshold variability and rapid-onset kinetics.

Authors:  Yuguo Yu; Yousheng Shu; David A McCormick
Journal:  J Neurosci       Date:  2008-07-16       Impact factor: 6.167

10.  Action potential initiation in the hodgkin-huxley model.

Authors:  Lucy J Colwell; Michael P Brenner
Journal:  PLoS Comput Biol       Date:  2009-01-16       Impact factor: 4.475

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  5 in total

1.  The domain of neuronal firing on a plane of input current and conductance.

Authors:  E Yu Smirnova; A V Zaitsev; K Kh Kim; A V Chizhov
Journal:  J Comput Neurosci       Date:  2015-08-18       Impact factor: 1.621

2.  Differences in the Electrophysiological Properties of Mouse Somatosensory Layer 2/3 Neurons In Vivo and Slice Stem from Intrinsic Sources Rather than a Network-Generated High Conductance State.

Authors:  Fernando R Fernandez; Bahar Rahsepar; John A White
Journal:  eNeuro       Date:  2018-04-13

3.  A Potential Mechanism of Sodium Channel Mediating the General Anesthesia Induced by Propofol.

Authors:  Jinglei Xiao; Zhengguo Chen; Buwei Yu
Journal:  Front Cell Neurosci       Date:  2020-12-04       Impact factor: 5.505

4.  Spike-Threshold Variability Originated from Separatrix-Crossing in Neuronal Dynamics.

Authors:  Longfei Wang; Hengtong Wang; Lianchun Yu; Yong Chen
Journal:  Sci Rep       Date:  2016-08-22       Impact factor: 4.379

5.  A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms.

Authors:  Pietro Balbi; Paolo Massobrio; Jeanette Hellgren Kotaleski
Journal:  PLoS Comput Biol       Date:  2017-09-01       Impact factor: 4.475

  5 in total

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